RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LCN8Q6JVE9 175 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TBPL2Q6SJ96 375 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM136Q6ZRR5 245 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 GRINAQ7Z429 371 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 PHF13Q86YI8 300 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TRAPPC5Q8IUR0 188 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SGPP2Q8IWX5 399 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM75Q8N9X5 138 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 ZFP62Q8NB50 900 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 ST6GALNAC3Q8NDV1 305 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 OR9Q1Q8NGQ5 310 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 OR10K1Q8NGX5 313 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 OR4C6Q8NH72 309 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 APOBEC3DQ96AK3 386 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 GALMQ96C23 342 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 PRRT1Q99946 306 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 LXNQ9BS40 222 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SHANK2-AS3Q9BTD1 123 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 DDA1Q9BW61 102 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 TSSK6Q9BXA6 273 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SNHG12Q9BXW3 62 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 GTSF1LQ9H1H1 148 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 OR51I1Q9H343 314 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 FAM96AQ9H5X1 160 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 NMNAT1Q9HAN9 279 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 CACYBPQ9HB71 228 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 MED9Q9NWA0 146 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 SCN3BQ9NY72 215 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF230Q9UIE0 474 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 POLR1DQ9Y2S0 133 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 HDGFL3Q9Y3E1 203 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 RBM7Q9Y580 266 aaKnown RBP1.66□□□□□ -2.14
HMGB1-201ENST00000326004 MCM3APO60318 1980 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 CHD5Q8TDI0 1954 aa1.66□□□□□ -2.14
HMGB1-201ENST00000326004 LAMA1P25391 3075 aa1.65□□□□□ -2.14
HMGB1-201ENST00000326004 PCLOQ9Y6V0 5065 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 A0A1B0GV72 72 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 C20orf202A1L168 122 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 DISC1C4P0D8 188 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 F5H5P2 479 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 M0R233 179 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 GPR31O00270 319 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CCL16O15467 120 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SIX6O95475 246 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 LTAP01374 205 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 REG1AP05451 166 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 C8GP07360 202 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 PFN1P07737 140 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 IL3P08700 152 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 NMBP08949 121 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR4A8P0C604 315 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SMIM10L2AP0DMW4 78 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SMIM10L2BP0DMW5 78 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR13C7P0DN81 318 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CGB3P0DN86 165 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CGB7P0DN87 165 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 KCNE1P15382 129 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ORM2P19652 201 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 AKR1C3P42330 323 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 REG1BP48304 166 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 PSMB3P49720 205 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CRYBA4P53673 196 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 KLF3P57682 345 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 RRAS2P62070 204 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ARF6P62330 175 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CCL7P80098 99 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 MRPS10P82664 201 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 HOXC5Q00444 222 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM267Q0VDI3 215 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ENDOGQ14249 297 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 GUK1Q16774 197 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 LRRC75BQ2VPJ9 315 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SMIM21Q3B7S5 101 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 LGALSLQ3ZCW2 172 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM69Q5SWH9 247 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SAMD13Q5VXD3 122 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TRIQKQ629K1 86 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 EBLN2Q6P2I7 272 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 FAM131AQ6UXB0 335 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM144Q7Z5S9 345 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 DAZ4Q86SG3 579 aaKnown RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 LRRC28Q86X40 367 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 BAP18Q8IXM2 172 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 AMN1Q8IY45 258 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 C8orf59Q8N0T1 100 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR5B17Q8NGF7 314 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR10D4PQ8NGN7 298 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR2T4Q8NH00 348 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR51H1Q8NH63 302 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR4A5Q8NH83 315 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TERB2Q8NHR7 220 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 SPPL2BQ8TCT7 592 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 CD200R1Q8TD46 325 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ASB17Q8WXJ9 295 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 ACY3Q96HD9 319 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 TEX37Q96LM6 180 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 PRAP1Q96NZ9 151 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR2V2Q96R30 315 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 OR7D2Q96RA2 312 aa1.65□□□□□ -2.15
HMGB1-201ENST00000326004 NIPSNAP1Q9BPW8 284 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms