RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ARAP2Q8WZ64 1704 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 TRGV5A0A0B4J1U4 118 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 CENPVL1A0A0U1RR11 272 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 SMKR1H3BMG3 65 aa6.35□□□□□ -1.39
LIMCH1-201ENST00000313860 FABP5P3A8MUU1 101 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 Q6AWC8 147 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 VPREB3Q9UKI3 123 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 DIDO1Q9BTC0 2240 aaKnown RBP6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 HMGN4O00479 90 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 CFHR3Q02985 330 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF826PQ6ZT77 177 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 FAM181AQ8N9Y4 354 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 LY6G5BQ8NDX9 201 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 LAMB1P07942 1786 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 SH2D1AO60880 128 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 PAX8Q06710 450 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 TFF3Q07654 80 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 TMEM196Q5HYL7 178 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 PRSS41Q7RTY9 318 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 ZNF645Q8N7E2 425 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 HS3ST6Q96QI5 342 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 SNURFQ9Y675 71 aa6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 BAZ2AQ9UIF9 1905 aaKnown RBP6.34□□□□□ -1.39
LIMCH1-201ENST00000313860 IGLV3-9A0A075B6K5 115 aa6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 ETDCA0A1B0GVM5 59 aa6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 PIANPQ8IYJ0 282 aa6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 RFLNBQ8N5W9 214 aa6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF71Q9NQZ8 489 aaPredicted RBP6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 ADAMTSL3P82987 1691 aa6.34□□□□□ -1.4
LIMCH1-201ENST00000313860 TNFRSF4P43489 277 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HMGA2P52926 109 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 SRSF7Q16629 238 aaKnown RBP eCLIP6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 NRN1LQ496H8 165 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 MIR17HGQ75NE6 70 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 MYEOVQ96EZ4 313 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 SDF2Q99470 211 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 MS4A8Q9BY19 250 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 RPL36A-HNRNPH2H7BZ11 118 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 CCL25O15444 150 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 CFHR1Q03591 330 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 DIAPH2-AS1Q14236 149 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 KIAA0040Q15053 153 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 Q8N1Y9 231 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 LINC00299Q6ZSB3 139 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BKO60814 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BJP06899 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 CECR9P0C854 216 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BOP23527 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BBP33778 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BDP58876 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BCP62807 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST2H2BEQ16778 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 ZNF525Q8N782 197 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BHQ93079 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 PTH2Q96A98 100 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BNQ99877 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST1H2BMQ99879 126 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 C1QTNF5Q9BXJ0 243 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 KLK13Q9UKR3 277 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 A0A087WUJ7 227 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 SOSTDC1Q6X4U4 206 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 ZPLD1Q8TCW7 415 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 SP7Q8TDD2 431 aaPredicted RBP6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 UPK3BQ9BT76 320 aa6.33□□□□□ -1.4
LIMCH1-201ENST00000313860 NINQ8N4C6 2090 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 A0A087WWL8 130 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 JMJD7-PLA2G4BH0Y9G9 81 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 IFNL4K9M1U5 179 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 LINC00477Q96M19 166 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 MDFIQ99750 246 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PDLIM7Q9NR12 457 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 LYRM9A8MSI8 78 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PSG7Q13046 419 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PTCRAQ6ISU1 281 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 TEX38Q6PEX7 206 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 SCXQ7RTU7 201 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 IGLC2P0DOY2 106 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 IGLC3P0DOY3 106 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 IFITM3Q01628 133 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 DAND5Q8N907 189 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PHF7Q9BWX1 381 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PRR33A8MZF0 331 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PRYO14603 147 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 RHOHQ15669 191 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 REG4Q9BYZ8 158 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 PRO1854Q9UHT4 67 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 DANCRP0C864 163 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 DEFB130BP0DP73 79 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 DEFB130AP0DP74 79 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 HERVK_113P63121 156 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 HIST3H2BBQ8N257 126 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 TMEM254Q8TBM7 123 aa6.32□□□□□ -1.4
LIMCH1-201ENST00000313860 C3orf79P0CE67 100 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 PLA2G2EQ9NZK7 142 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 TRBV27A0A0K0K1C4 114 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 SAP30O75446 220 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 CCL14Q16627 93 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 CEND1Q8N111 149 aa6.31□□□□□ -1.4
LIMCH1-201ENST00000313860 CXCL12P48061 93 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms