RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MORN3Q6PF18 240 aaPredicted RBP14.24□□□□□ -0.13
LIME1-201ENST00000309546 SLC35E1Q96K37 410 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 MFFQ9GZY8 342 aa14.24□□□□□ -0.13
LIME1-201ENST00000309546 PAIP2BQ9ULR5 123 aaKnown RBP14.24□□□□□ -0.13
LIME1-201ENST00000309546 DUXBA0A1W2PPF3 345 aa14.23□□□□□ -0.13
LIME1-201ENST00000309546 SPP1P10451 314 aa14.23□□□□□ -0.13
LIME1-201ENST00000309546 ZNF79Q15937 498 aa14.23□□□□□ -0.13
LIME1-201ENST00000309546 SIGLEC15Q6ZMC9 328 aa14.23□□□□□ -0.13
LIME1-201ENST00000309546 RNF125Q96EQ8 232 aa14.23□□□□□ -0.13
LIME1-201ENST00000309546 BUB3O43684 328 aa14.22□□□□□ -0.13
LIME1-201ENST00000309546 GIG44P09565 113 aaPredicted RBP14.22□□□□□ -0.13
LIME1-201ENST00000309546 NRN1Q9NPD7 142 aa14.22□□□□□ -0.13
LIME1-201ENST00000309546 CLEC5AQ9NY25 188 aa14.22□□□□□ -0.13
LIME1-201ENST00000309546 FAM90A26D6RGX4 464 aa14.21□□□□□ -0.13
LIME1-201ENST00000309546 SNRPD3P62318 126 aaKnown RBP14.21□□□□□ -0.13
LIME1-201ENST00000309546 ZNF90Q03938 601 aa14.21□□□□□ -0.13
LIME1-201ENST00000309546 GAMTQ14353 236 aa14.21□□□□□ -0.13
LIME1-201ENST00000309546 TMEM41BQ5BJD5 291 aa14.21□□□□□ -0.13
LIME1-201ENST00000309546 RAB40CQ96S21 281 aa14.21□□□□□ -0.13
LIME1-201ENST00000309546 SLC25A21Q9BQT8 299 aaPredicted RBP14.21□□□□□ -0.13
LIME1-201ENST00000309546 IGHV4-28A0A0C4DH34 117 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 PITX3O75364 302 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 GPX4P36969 197 aaPredicted RBP14.2□□□□□ -0.14
LIME1-201ENST00000309546 ATP5IP56385 69 aaPredicted RBP14.2□□□□□ -0.14
LIME1-201ENST00000309546 LYZP61626 148 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 RAB11AP62491 216 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 PPP1R1AQ13522 171 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 CCDC190Q86UF4 302 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 CENPSQ8N2Z9 138 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 Q8NAQ8 132 aa14.2□□□□□ -0.14
LIME1-201ENST00000309546 IGKV1D-37A0A075B6S9 117 aa14.19□□□□□ -0.14
LIME1-201ENST00000309546 SFT2D2O95562 160 aa14.19□□□□□ -0.14
LIME1-201ENST00000309546 NUP62P37198 522 aaPredicted RBP14.19□□□□□ -0.14
LIME1-201ENST00000309546 OR2F1Q13607 317 aa14.19□□□□□ -0.14
LIME1-201ENST00000309546 LRTM2Q8N967 370 aa14.19□□□□□ -0.14
LIME1-201ENST00000309546 MAGT1Q9H0U3 335 aa14.19□□□□□ -0.14
LIME1-201ENST00000309546 MED6O75586 246 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 FABP1P07148 127 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 HOXB5P09067 269 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 INPP1P49441 399 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 SPANXN2Q5MJ10 180 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 OR8G2PQ6IF36 304 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 DEDD2Q8WXF8 326 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 PFDN2Q9UHV9 154 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 TMED3Q9Y3Q3 217 aa14.18□□□□□ -0.14
LIME1-201ENST00000309546 RBMY1A1P0DJD3 496 aaKnown RBP14.17□□□□□ -0.14
LIME1-201ENST00000309546 RBMY1CP0DJD4 496 aa14.17□□□□□ -0.14
LIME1-201ENST00000309546 SLC25A6P12236 298 aa14.17□□□□□ -0.14
LIME1-201ENST00000309546 MIFP14174 115 aa14.17□□□□□ -0.14
LIME1-201ENST00000309546 RBMY1FQ15415 496 aaKnown RBP14.17□□□□□ -0.14
LIME1-201ENST00000309546 PPP1R14BQ96C90 147 aa14.17□□□□□ -0.14
LIME1-201ENST00000309546 RBM38Q9H0Z9 239 aaKnown RBP14.17□□□□□ -0.14
LIME1-201ENST00000309546 TBC1D24Q9ULP9 559 aa14.17□□□□□ -0.14
LIME1-201ENST00000309546 ZNF705EA8MWA4 302 aaPredicted RBP14.16□□□□□ -0.14
LIME1-201ENST00000309546 WRBO00258 174 aa14.16□□□□□ -0.14
LIME1-201ENST00000309546 NUTF2P61970 127 aaKnown RBP14.16□□□□□ -0.14
LIME1-201ENST00000309546 C2CD4CQ8TF44 421 aa14.16□□□□□ -0.14
LIME1-201ENST00000309546 CIB3Q96Q77 187 aaPredicted RBP14.16□□□□□ -0.14
LIME1-201ENST00000309546 SRRQ9GZT4 340 aa14.16□□□□□ -0.14
LIME1-201ENST00000309546 SEPSECSQ9HD40 501 aaKnown RBP14.16□□□□□ -0.14
LIME1-201ENST00000309546 X6R8D5 127 aa14.16□□□□□ -0.14
LIME1-201ENST00000309546 SNRPGP15A8MWD9 76 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 SYNGR2O43760 224 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 DEDDO75618 318 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 RPP30P78346 268 aaKnown RBP14.15□□□□□ -0.14
LIME1-201ENST00000309546 GGNBP1Q5YKI7 109 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 TRIQKQ629K1 86 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 RPP25LQ8N5L8 163 aaKnown RBP14.15□□□□□ -0.14
LIME1-201ENST00000309546 LINC00052Q96N35 136 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 TRGV9Q99603 122 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 XCL2Q9UBD3 114 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 KMT2AQ03164 3969 aa14.15□□□□□ -0.14
LIME1-201ENST00000309546 H3BMM0 161 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 H3BP45 60 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 DEFB1P60022 68 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 LGALS9CQ6DKI2 356 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 GSG1LQ6UXU4 331 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 CSNK1G2-AS1Q8NCQ2 148 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 C1QTNF4Q9BXJ3 329 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 WDR12Q9GZL7 423 aaKnown RBP14.14□□□□□ -0.15
LIME1-201ENST00000309546 HRH4Q9H3N8 390 aa14.14□□□□□ -0.15
LIME1-201ENST00000309546 IGKV1OR2-108A0A075B7D4 117 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 LINC00854A0A1B0GVQ3 168 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 IGKV3-20P01619 116 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 HLA-DRB4P13762 266 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 HLA-DMBP28068 263 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 NKX2-1P43699 371 aaPredicted RBP14.13□□□□□ -0.15
LIME1-201ENST00000309546 SPANXN5Q5MJ07 72 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 THAP8Q8NA92 274 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 COQ8AQ8NI60 647 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 HLA-DRB4X5D2U9 266 aa14.13□□□□□ -0.15
LIME1-201ENST00000309546 ELOA3CA0A087WX78 387 aaPredicted RBP14.12□□□□□ -0.15
LIME1-201ENST00000309546 IGLL5B9A064 214 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 C11orf94C9JXX5 98 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 ADAP1O75689 374 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 ID1P41134 155 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 UBE2MP61081 183 aaKnown RBP14.12□□□□□ -0.15
LIME1-201ENST00000309546 AKR1C1Q04828 323 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 BAK1Q16611 211 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 C1orf194Q5T5A4 169 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms