RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RNASE4P34096 147 aaKnown RBP10.58□□□□□ -0.72
COL3A1-201ENST00000304636 OR13C6PQ8NH95 151 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 TNFRSF14Q92956 283 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 PIMREGQ9BSJ6 248 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 A0A087X0K7 114 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 PRR19A6NJB7 356 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 PLAURQ03405 335 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 CYSLTR1Q9Y271 337 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 RALGAPA1Q6GYQ0 2036 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 ZNF815PA8K554 130 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 D6R8Y8 96 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 ASXL3Q9C0F0 2248 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 IGHV3OR16-8A0A075B7F1 116 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 A8MWV9 139 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 LTBRP36941 435 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 BCL6BQ8N143 479 aaPredicted RBP10.58□□□□□ -0.72
COL3A1-201ENST00000304636 TRGV9Q99603 122 aa10.58□□□□□ -0.72
COL3A1-201ENST00000304636 LINC01549A6NIU2 74 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 IGKV3-20P01619 116 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 ZFP36L1Q07352 338 aaKnown RBP10.57□□□□□ -0.72
COL3A1-201ENST00000304636 IGKV3OR2-268A0A0C4DH90 116 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 EVI2AP22794 236 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 SPAG8Q99932 426 aaPredicted RBP10.57□□□□□ -0.72
COL3A1-201ENST00000304636 TMPRSS3P57727 454 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 FAM57AQ8TBR7 257 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 C1orf147Q96MC9 270 aaPredicted RBP10.57□□□□□ -0.72
COL3A1-201ENST00000304636 ESDP10768 282 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 TPTE2P1Q5T6R2 138 aa10.57□□□□□ -0.72
COL3A1-201ENST00000304636 LAGE3Q14657 143 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 SFTA2Q6UW10 78 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 CD177Q8N6Q3 437 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 NEU4Q8WWR8 484 aaPredicted RBP10.56□□□□□ -0.72
COL3A1-201ENST00000304636 TRAV21A0A0B4J279 112 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 NDUFS8O00217 210 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 TMEM95Q3KNT9 176 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 SPRR3Q9UBC9 169 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 GAGE12BA1L429 117 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 DMRTC2Q8IXT2 367 aaPredicted RBP10.56□□□□□ -0.72
COL3A1-201ENST00000304636 LINC01560Q8TB33 94 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 PSG1P11464 419 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 SLC25A39Q9BZJ4 359 aaPredicted RBP10.56□□□□□ -0.72
COL3A1-201ENST00000304636 LILRA1O75019 489 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 CDKN1AP38936 164 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 C20orf204Q6ZNR8 217 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 TMEM167AQ8TBQ9 72 aa10.56□□□□□ -0.72
COL3A1-201ENST00000304636 PSMB11A5LHX3 300 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 IFI27P40305 119 aaPredicted RBP10.55□□□□□ -0.72
COL3A1-201ENST00000304636 WDR90Q96KV7 1748 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 PMS2P5A8MQ11 134 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 E9PLN8 166 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 GTSCR1Q86UQ5 136 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 TMEM101Q96IK0 257 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 NAA38Q9BRA0 125 aaKnown RBP10.55□□□□□ -0.72
COL3A1-201ENST00000304636 NPIPB5A8MRT5 1133 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 PDLIM4P50479 330 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 PAX9P55771 341 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 LYZL1Q6UWQ5 148 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 EXOC3-AS1Q8N2X6 119 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 JMJD8Q96S16 334 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 GFRA4Q9GZZ7 299 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 PTPRZ1P23471 2315 aaPredicted RBP10.55□□□□□ -0.72
COL3A1-201ENST00000304636 IGHV1-46P01743 117 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 C10orf55Q5SWW7 151 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 KIR3DL3Q8N743 410 aa10.55□□□□□ -0.72
COL3A1-201ENST00000304636 PPIFP30405 207 aaKnown RBP10.54□□□□□ -0.72
COL3A1-201ENST00000304636 TOMM40O96008 361 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 KIR3DS1Q14943 382 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 KLF2Q9Y5W3 355 aaPredicted RBP10.54□□□□□ -0.72
COL3A1-201ENST00000304636 IGKV1-6A0A0C4DH72 117 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 IL18BPO95998 194 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 ZNF329Q86UD4 541 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 IGHV4-39P01824 125 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 KLF17Q5JT82 389 aaPredicted RBP10.54□□□□□ -0.72
COL3A1-201ENST00000304636 SCRT1Q9BWW7 348 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 YAE1D1Q9NRH1 226 aa10.54□□□□□ -0.72
COL3A1-201ENST00000304636 TRAV8-4A0A0B4J246 113 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 C9orf172C9J069 976 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 NTN3O00634 580 aaPredicted RBP10.53□□□□□ -0.72
COL3A1-201ENST00000304636 MBNL3Q9NUK0 354 aaKnown RBP10.53□□□□□ -0.72
COL3A1-201ENST00000304636 METRNQ9UJH8 293 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 MYLKQ15746 1914 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 AHCTF1Q8WYP5 2266 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 MPDZO75970 2070 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 YPEL3P61236 119 aaPredicted RBP10.53□□□□□ -0.72
COL3A1-201ENST00000304636 ZNF726P1Q15940 193 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 A0A1B0GWJ7 208 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 LHFPL4Q7Z7J7 247 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 NCR2O95944 276 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 PLNP26678 52 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 PAX2Q02962 417 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 GAGE1Q13065 139 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 LYPD1Q8N2G4 141 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 RNF182Q8N6D2 247 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 ICE1Q9Y2F5 2266 aa10.53□□□□□ -0.72
COL3A1-201ENST00000304636 A0A1B0GUS0 222 aa10.52□□□□□ -0.72
COL3A1-201ENST00000304636 B3GALT5-AS1P59052 145 aa10.52□□□□□ -0.72
COL3A1-201ENST00000304636 LYPD6BQ8NI32 183 aa10.52□□□□□ -0.72
COL3A1-201ENST00000304636 TRAV2A0A0B4J234 112 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 PRR31Q5SQ13 230 aa10.52□□□□□ -0.73
COL3A1-201ENST00000304636 C18orf32Q8TCD1 76 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms