RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SRSF3P84103 164 aaKnown RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 FAM90A2PQ658T7 463 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 LINC01587Q99440 93 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 S4R3C0 116 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 PPIAL4CA0A0B4J2A2 164 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 PPIAL4GP0DN37 164 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 GZMBP10144 247 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 RPL23P62829 140 aaKnown RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 ITLN2Q8WWU7 325 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 NAA38Q9BRA0 125 aaKnown RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 TRBV6-7A0A0A0MS04 114 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 PATE3B3GLJ2 98 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 MIR17HGQ75NE6 70 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 OVOL2Q9BRP0 275 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 PLSCR4Q9NRQ2 329 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 NDUFA2O43678 99 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 AMBPP02760 352 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 KLF14Q8TD94 323 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-201ENST00000295550 PPBPP02775 128 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 C2orf82Q6UX34 121 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 ZNF703Q9H7S9 590 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-201ENST00000295550 TMPRSS3P57727 454 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 ATP5L2Q7Z4Y8 100 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 GLRX5Q86SX6 157 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 C1QL4Q86Z23 238 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 FGF11Q92914 225 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 CHODLQ9H9P2 273 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 LAMTOR3Q9UHA4 124 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 DSCAMO60469 2012 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 CD7P09564 240 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 NPC2P61916 151 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 HEPN1Q6WQI6 88 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 SELENOKQ9Y6D0 94 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 FOXL1Q12952 345 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 MORN3Q6PF18 240 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-201ENST00000295550 ARPC1AQ92747 370 aa8.26□□□□□ -1.09
COL6A3-201ENST00000295550 PRR33A8MZF0 331 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 PAQR4Q8N4S7 273 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-201ENST00000295550 CRIM1Q9NZV1 1036 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 COL4A6Q14031 1691 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 IGHV1-69-2A0A0G2JMI3 117 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 HAX1O00165 279 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 TOMM40O96008 361 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 ADAMTSL5Q6ZMM2 481 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 IFI27L1Q96BM0 104 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 KIR3DS1Q14943 382 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 FAM166AQ6J272 317 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 GTF3AQ92664 365 aaKnown RBP8.25□□□□□ -1.09
COL6A3-201ENST00000295550 ACACBO00763 2458 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 A0A1W2PRE2 83 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 PRR19A6NJB7 356 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 PLPPR1Q8TBJ4 325 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 LOXL4Q96JB6 756 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 CCL19Q99731 98 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 GP6Q9HCN6 339 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 C21orf62Q9NYP8 219 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 FBXL7Q9UJT9 491 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-201ENST00000295550 GFRA3O60609 400 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 ACP7Q6ZNF0 438 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 PPP1R32Q7Z5V6 425 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-201ENST00000295550 TRGV2A0A075B6R0 118 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 A0A087X0K7 114 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 ITGB1BP1O14713 200 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 C1QTNF9P0C862 333 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 GATD1Q8NB37 220 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 CACNG8Q8WXS5 425 aa8.25□□□□□ -1.09
COL6A3-201ENST00000295550 A0A0A6YYD4 124 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 A0A0G2JMM0 328 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 A0A1W2PPB8 328 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 KIR3DP1A8MWS1 328 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 PF4P02776 101 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 LTBP2Q14767 1821 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 GAGE2AQ6NT46 116 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 FOXD3Q9UJU5 478 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-201ENST00000295550 KLF12Q9Y4X4 402 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 IGKV1-9A0A0C4DH69 117 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 GAGE12BA1L429 117 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 TNRC6BQ9UPQ9 1833 aaKnown RBP8.24□□□□□ -1.09
COL6A3-201ENST00000295550 A0A1B0GW64 132 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 PSG1P11464 419 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 UBE2V1Q13404 147 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 TNFRSF14Q92956 283 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 RNF115Q9Y4L5 304 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 C9orf153Q5TBE3 101 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 GPR179Q6PRD1 2367 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 LINC01559Q495D7 138 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 JPT2Q9H910 190 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 SPANXA1Q9NS26 97 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 IGHV3OR16-8A0A075B7F1 116 aa8.24□□□□□ -1.09
COL6A3-201ENST00000295550 C17orf98A8MV24 154 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 LYZL4Q96KX0 146 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 MRPS18CQ9Y3D5 142 aaKnown RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 TDGF1P3P51864 188 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 FHL1Q13642 323 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 NDUFS6O75380 124 aaKnown RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 SMPXQ9UHP9 88 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 DLEU1O43261 78 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 CD5P06127 495 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms