RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 RIPPLY3P57055 190 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 SCN5AQ14524 2016 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 TRAV21A0A0B4J279 112 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 IFI27P40305 119 aaPredicted RBP9.45□□□□□ -0.9
USP53-201ENST00000274030 NDPQ00604 133 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 SCRT1Q9BWW7 348 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 PLSCR4Q9NRQ2 329 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 SPCS1Q9Y6A9 102 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 SIPA1L1O43166 1804 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 A0A1W2PRE2 83 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 H3BUT2 72 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 GNLYP22749 145 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 TMEM95Q3KNT9 176 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 NHP2Q9NX24 153 aaKnown RBP9.45□□□□□ -0.9
USP53-201ENST00000274030 TRAV41A0A0B4J266 112 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 PSG1P11464 419 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 SUPT4H1P63272 117 aaKnown RBP9.45□□□□□ -0.9
USP53-201ENST00000274030 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.45□□□□□ -0.92e-16■■□□□ 12
USP53-201ENST00000274030 LRRK1Q38SD2 2015 aa9.45□□□□□ -0.9
USP53-201ENST00000274030 A0A1B0GW15 77 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 IGHV1-8P0DP01 117 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 TIMP3P35625 211 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 SEPSECSQ9HD40 501 aaKnown RBP9.44□□□□□ -0.9
USP53-201ENST00000274030 IGFL4Q6B9Z1 124 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 TMEM170AQ8WVE7 144 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 GGTLC1Q9BX51 225 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 NCR2O95944 276 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 FOXL1Q12952 345 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 TEX38Q6PEX7 206 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 SIGLEC15Q6ZMC9 328 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BKO60814 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BJP06899 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BOP23527 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BBP33778 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 FXYD7P58549 80 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BDP58876 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BCP62807 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST2H2BEQ16778 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.44□□□□□ -0.9
USP53-201ENST00000274030 ZNF329Q86UD4 541 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BHQ93079 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BNQ99877 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 HIST1H2BMQ99879 126 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 DERL1Q9BUN8 251 aa9.44□□□□□ -0.9
USP53-201ENST00000274030 MED13LQ71F56 2210 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 A0A0G2JNJ9 132 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 IGHV4-39P01824 125 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 OSTCQ9NRP0 149 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 Q9UFV3 132 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 TMEM178BH3BS89 294 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 CLPSP04118 112 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 C10orf126Q8N4M7 172 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 FAM169BQ8N8A8 192 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 TRAV2A0A0B4J234 112 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 IGHV1-3A0A0C4DH29 117 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 ZNF415Q09FC8 603 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 HEPN1Q6WQI6 88 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 C11orf68Q9H3H3 251 aaKnown RBP9.43□□□□□ -0.9
USP53-201ENST00000274030 SLC25A15Q9Y619 301 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 H3BUX3 64 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 HBDP02042 147 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 PCP4P48539 62 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 NIT1Q86X76 327 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 CHCHD5Q9BSY4 110 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 MBNL3Q9NUK0 354 aaKnown RBP9.43□□□□□ -0.9
USP53-201ENST00000274030 FANCMQ8IYD8 2048 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 GREB1LQ9C091 1923 aaPredicted RBP9.43□□□□□ -0.9
USP53-201ENST00000274030 IGKV1-5P01602 117 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 ZNF688P0C7X2 276 aa9.43□□□□□ -0.9
USP53-201ENST00000274030 SRSF1Q07955 248 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP53-201ENST00000274030 LINC00587B1AMM8 73 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 CD28P10747 220 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 TRAV9-1A0A075B6T8 112 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 SAP30O75446 220 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 CD300EQ496F6 205 aaPredicted RBP9.42□□□□□ -0.9
USP53-201ENST00000274030 DMRTC2Q8IXT2 367 aaPredicted RBP9.42□□□□□ -0.9
USP53-201ENST00000274030 FNDC4Q9H6D8 234 aaPredicted RBP9.42□□□□□ -0.9
USP53-201ENST00000274030 LAMTOR2Q9Y2Q5 125 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 DUSP14O95147 198 aaKnown RBP9.42□□□□□ -0.9
USP53-201ENST00000274030 PNRC2Q9NPJ4 139 aaKnown RBP9.42□□□□□ -0.9
USP53-201ENST00000274030 CYSLTR1Q9Y271 337 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 SAMD13Q5VXD3 122 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 LHFPL1Q86WI0 220 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 Q8TAT8 98 aa9.42□□□□□ -0.9
USP53-201ENST00000274030 LINC00473A8K010 186 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 CXCL1P09341 107 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 EFNA4P52798 201 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 FGF16O43320 207 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 C17orf82Q86X59 251 aaPredicted RBP9.41□□□□□ -0.9
USP53-201ENST00000274030 LOC285556D6RIA3 1793 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 RPP25LQ8N5L8 163 aaKnown RBP9.41□□□□□ -0.9
USP53-201ENST00000274030 MGST2Q99735 147 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 SLC25A39Q9BZJ4 359 aaPredicted RBP9.41□□□□□ -0.9
USP53-201ENST00000274030 IGHV3-53P01767 116 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 NPC2P61916 151 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 MLANAQ16655 118 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 LYPD2Q6UXB3 125 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 C19orf67A6NJJ6 358 aa9.41□□□□□ -0.9
USP53-201ENST00000274030 DPM2O94777 84 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms