RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FAM90A2PQ658T7 463 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 FBXL7Q9UJT9 491 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 CORTO00230 105 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 IFNA1P01562 189 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 Q56UQ5 140 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 TTC9CQ8N5M4 171 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 SGMS2Q8NHU3 365 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 MOB4Q9Y3A3 225 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 OTOGQ6ZRI0 2925 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 CXorf1O96002 111 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 OR5AU1Q8NGC0 362 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 SNAPINO95295 136 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 NPPCP23582 126 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 LRRC75A-AS1Q8N1F1 130 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 ISOC2Q96AB3 205 aa12.93□□□□□ -0.34
USP4-201ENST00000265560 NPIPB5A8MRT5 1133 aa12.92□□□□□ -0.34
USP4-201ENST00000265560 DNASE2O00115 360 aaPredicted RBP12.92□□□□□ -0.34
USP4-201ENST00000265560 ZNF727A8MUV8 499 aa12.92□□□□□ -0.34
USP4-201ENST00000265560 GNG7O60262 68 aa12.92□□□□□ -0.34
USP4-201ENST00000265560 GATA3P23771 443 aa12.92□□□□□ -0.34
USP4-201ENST00000265560 C15orf32Q32M92 178 aa12.92□□□□□ -0.34
USP4-201ENST00000265560 C7orf77A4D0Y5 90 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 PGPEP1LA6NFU8 196 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 RHOGP84095 191 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 RD3LP0DJH9 198 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 SLC25A2Q9BXI2 301 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 F8W735 103 aaPredicted RBP12.91□□□□□ -0.34
USP4-201ENST00000265560 CLN5O75503 358 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 NDUFB4O95168 129 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 HNF1AP20823 631 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 BLNKQ8WV28 456 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 FAM167A-AS1Q96KT0 104 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 TRGV9Q99603 122 aa12.91□□□□□ -0.34
USP4-201ENST00000265560 SRSF8Q9BRL6 282 aaKnown RBP12.91□□□□□ -0.34
USP4-201ENST00000265560 A6NDX4 124 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 SMIM7Q9BQ49 75 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 CHRDL1Q9BU40 450 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 C21orf62Q9NYP8 219 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 TECRQ9NZ01 308 aaKnown RBP12.9□□□□□ -0.34
USP4-201ENST00000265560 C8orf88P0DMB2 117 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 GPR183P32249 361 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 NANPQ8TBE9 248 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 HIVEP2P31629 2446 aa12.9□□□□□ -0.34
USP4-201ENST00000265560 SCO2A0A1W2PP80 73 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 SELENOTP62341 195 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 ZNF329Q86UD4 541 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 ZNF48Q96MX3 618 aaPredicted RBP12.89□□□□□ -0.35
USP4-201ENST00000265560 NIPSNAP3BQ9BS92 247 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 MANBALQ9NQG1 85 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 IL4P05112 153 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 C16orf82Q7Z2V1 217 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 PARLQ9H300 379 aa12.89□□□□□ -0.35
USP4-201ENST00000265560 HYPMO75409 117 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 UBE2L3P68036 154 aaKnown RBP12.88□□□□□ -0.35
USP4-201ENST00000265560 MFAP4P55083 255 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 CYB5R2Q6BCY4 276 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 MBD6Q96DN6 1003 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 SMDT1Q9H4I9 107 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 TRAV41A0A0B4J266 112 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 CLEC3BP05452 202 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 SUMO1P63165 101 aaKnown RBP12.88□□□□□ -0.35
USP4-201ENST00000265560 CLEC19AQ6UXS0 136 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 GNB4Q9HAV0 340 aa12.88□□□□□ -0.35
USP4-201ENST00000265560 TAGLN2P37802 199 aaKnown RBP12.87□□□□□ -0.35
USP4-201ENST00000265560 BPIFB3P59826 476 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 C10orf99Q6UWK7 81 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 SUN5Q8TC36 379 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 KLK15Q9H2R5 256 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 OR1L4Q8NGR5 311 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 FAM110DQ8TAY7 271 aaPredicted RBP12.87□□□□□ -0.35
USP4-201ENST00000265560 PFDN5Q99471 154 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 PAXXQ9BUH6 204 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 THYN1Q9P016 225 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 WNK1Q9H4A3 2382 aa12.87□□□□□ -0.35
USP4-201ENST00000265560 IGHV3OR16-13A0A075B7E8 117 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 IGHV3-74A0A0B4J1X5 117 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 IGHV3-11P01762 117 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 ADMP35318 185 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 RANP62826 216 aaKnown RBP12.86□□□□□ -0.35
USP4-201ENST00000265560 ADIRFQ15847 76 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 URGCP-MRPS24S4R325 110 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 CTSGP08311 255 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 TAS2R45P59539 299 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 USF2Q15853 346 aaPredicted RBP12.86□□□□□ -0.35
USP4-201ENST00000265560 J3QLI3 93 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 HOXA3O43365 443 aaPredicted RBP12.86□□□□□ -0.35
USP4-201ENST00000265560 IER3P46695 156 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 ZNF491Q8N8L2 437 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 OR1L6Q8NGR2 347 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 SGK494Q96LW2 274 aa12.86□□□□□ -0.35
USP4-201ENST00000265560 SETXQ7Z333 2677 aaKnown RBP12.85□□□□□ -0.35
USP4-201ENST00000265560 GGTLC3B5MD39 225 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 PPP5D1E7EU14 171 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 FCGR2BP31994 310 aaPredicted RBP12.85□□□□□ -0.35
USP4-201ENST00000265560 PRSS57Q6UWY2 283 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 TVP23CQ96ET8 276 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 OR51M1Q9H341 326 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 HIGD1AQ9Y241 93 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 IGHV3-49A0A0A0MS15 119 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 CRYBB3P26998 211 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms