RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CIARTQ8N365 385 aaPredicted RBP11.64□□□□□ -0.55
SDC1-201ENST00000254351 MRPL36Q9P0J6 103 aaKnown RBP11.64□□□□□ -0.55
SDC1-201ENST00000254351 PCNX1Q96RV3 2341 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 TEX50A0A1B0GTY4 177 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 RNFT1Q5M7Z0 435 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 RUSC1-AS1Q66K80 236 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 HCP5Q6MZN7 132 aa11.64□□□□□ -0.55
SDC1-201ENST00000254351 GUSBP1Q15486 140 aa11.63□□□□□ -0.55
SDC1-201ENST00000254351 ARRDC1-AS1Q9H2J1 176 aa11.63□□□□□ -0.55
SDC1-201ENST00000254351 THYN1Q9P016 225 aa11.63□□□□□ -0.55
SDC1-201ENST00000254351 TMSB15BA0A087X1C1 80 aa11.63□□□□□ -0.55
SDC1-201ENST00000254351 ZZEF1O43149 2961 aa11.63□□□□□ -0.55
SDC1-201ENST00000254351 HLA-DRB1P01911 266 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 APOHP02749 345 aaPredicted RBP11.62□□□□□ -0.55
SDC1-201ENST00000254351 IGLC1P0CG04 106 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 NHLH1Q02575 133 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 KLF5Q13887 457 aaPredicted RBP11.62□□□□□ -0.55
SDC1-201ENST00000254351 C6orf15Q6UXA7 325 aaPredicted RBP11.62□□□□□ -0.55
SDC1-201ENST00000254351 PATE2Q6UY27 113 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 PTPRBP23467 1997 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 TRGV8A0A0C4DH27 118 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 SERTM2A0A1B0GWG4 89 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 CD5LO43866 347 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 SAA1P0DJI8 122 aaPredicted RBP11.62□□□□□ -0.55
SDC1-201ENST00000254351 NMUP48645 174 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 RTL8BQ17RB0 113 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 FAM90A1Q86YD7 464 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 PDPNQ86YL7 162 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 SPRR3Q9UBC9 169 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 JPT1Q9UK76 154 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 hADV38S2A0JD32 116 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 PRR33A8MZF0 331 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 TNFSF15O95150 251 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 OR5AL1P0C617 328 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 COL8A1P27658 744 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 TMEM97Q5BJF2 176 aa11.62□□□□□ -0.55
SDC1-201ENST00000254351 FOXA2Q9Y261 457 aaPredicted RBP11.62□□□□□ -0.55
SDC1-201ENST00000254351 HIST1H1AQ02539 215 aaPredicted RBP11.61□□□□□ -0.55
SDC1-201ENST00000254351 MEF2CQ06413 473 aaPredicted RBP11.61□□□□□ -0.55
SDC1-201ENST00000254351 LOXL1Q08397 574 aaPredicted RBP11.61□□□□□ -0.55
SDC1-201ENST00000254351 FAM71F2Q6NXP2 309 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 PRNTQ86SH4 94 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 C5orf17Q8NAS9 161 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 PRSS3P2Q8NHM4 247 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 GTSF1LQ9H1H1 148 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 RPP21Q9H633 154 aaKnown RBP11.61□□□□□ -0.55
SDC1-201ENST00000254351 RABAC1Q9UI14 185 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 FAM87AP0C7U9 286 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 PLA2G2CQ5R387 149 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 VWA1Q6PCB0 445 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 OR4A5Q8NH83 315 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 PERPQ96FX8 193 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 TTTY13Q9BZ97 58 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 WNK2Q9Y3S1 2297 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 CACNA1BQ00975 2339 aa11.61□□□□□ -0.55
SDC1-201ENST00000254351 CYC1P08574 325 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 CECR9P0C854 216 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 C2orf91Q6ZV80 131 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 MTURNQ8N3F0 131 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 DDB2Q92466 427 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 ZNF257Q9Y2Q1 563 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 PCSK5Q92824 1860 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 ZNF883P0CG24 379 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 RNASE2P10153 161 aaKnown RBP11.6□□□□□ -0.55
SDC1-201ENST00000254351 CD69Q07108 199 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 SMAGPQ0VAQ4 97 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 EPDR1Q9UM22 224 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 DSCAMO60469 2012 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 IGHV3-72A0A0B4J1Y9 119 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 GCSAMQ8N6F7 178 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 WIPF2Q8TF74 440 aaPredicted RBP11.6□□□□□ -0.55
SDC1-201ENST00000254351 SMIM12Q96EX1 92 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 HARBI1Q96MB7 349 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 CCL13Q99616 98 aa11.6□□□□□ -0.55
SDC1-201ENST00000254351 LIPFP07098 398 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 PRCDQ00LT1 54 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 EXOC3-AS1Q8N2X6 119 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 FAM216BQ8N7L0 139 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 MGST3O14880 152 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 OR2J3O76001 311 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 DIAPH2-AS1Q14236 149 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 OR10AG1Q8NH19 301 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 FXYD5Q96DB9 178 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 PRNDQ9UKY0 176 aa11.59□□□□□ -0.55
SDC1-201ENST00000254351 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.58□□□□□ -0.56
SDC1-201ENST00000254351 TRGV5A0A0B4J1U4 118 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 A8MWL6 223 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 KIR3DS1Q14943 382 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 MSMPQ1L6U9 139 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 H1FXQ92522 213 aaKnown RBP11.58□□□□□ -0.56
SDC1-201ENST00000254351 A0A0G2JLM5 398 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 A0A1B0GXF2 115 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 UPK2O00526 184 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 ARMS2P0C7Q2 107 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 CT45A6P0DMU7 189 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 CT45A5P0DMU8 189 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 CT45A7P0DMV0 189 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 PLP1P60201 277 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 C17orf58Q2M2W7 97 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 TMEM108Q6UXF1 575 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms