RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 MT-ATP8P03928 68 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 FOXG1P55316 489 aaPredicted RBP11.97□□□□□ -0.49
PTPRA-201ENST00000216877 BRWD1-AS2P59051 145 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 PCNX1Q96RV3 2341 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 IGHV1OR21-1A0A087WYE8 117 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 OR2J3O76001 311 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 LINC01545Q5VT33 79 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF497Q6ZNH5 498 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 ZNF747Q9BV97 191 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 CHRNA10Q9GZZ6 450 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 CYSLTR1Q9Y271 337 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 PRRC2CQ9Y520 2896 aaKnown RBP11.97□□□□□ -0.49
PTPRA-201ENST00000216877 TGFAP01135 160 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 PRSS1P07477 247 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 ORM2P19652 201 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 MORN5Q5VZ52 161 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 RASL11AQ6T310 242 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 Q6ZSR3 168 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 BOD1L2Q8IYS8 172 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 OBP2BQ9NPH6 170 aa11.97□□□□□ -0.49
PTPRA-201ENST00000216877 PRR14LQ5THK1 2151 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 PSPNO60542 156 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 RBMXL3Q8N7X1 1067 aaKnown RBP11.96□□□□□ -0.49
PTPRA-201ENST00000216877 DUSP23Q9BVJ7 150 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 RPP21Q9H633 154 aaKnown RBP11.96□□□□□ -0.49
PTPRA-201ENST00000216877 FAM106CPP0CH98 169 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 VDAC2P45880 294 aaPredicted RBP11.96□□□□□ -0.49
PTPRA-201ENST00000216877 FAM106AQ4KMX7 169 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 ZBTB34Q8NCN2 500 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 OR9G4Q8NGQ1 327 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 POLDIP2Q9Y2S7 368 aa11.96□□□□□ -0.49
PTPRA-201ENST00000216877 DSCAML1Q8TD84 2053 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 PLGLB1Q02325 96 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 FOXF2Q12947 444 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 SLC25A53Q5H9E4 307 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 MBNL2Q5VZF2 373 aaKnown RBP11.96□□□□□ -0.5
PTPRA-201ENST00000216877 PSG8Q9UQ74 426 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 INSIG2Q9Y5U4 225 aa11.96□□□□□ -0.5
PTPRA-201ENST00000216877 WDFY4Q6ZS81 3184 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 LOC107984156A0A0G2JMH3 177 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 H3BVH4 76 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 IFI27P40305 119 aaPredicted RBP11.95□□□□□ -0.5
PTPRA-201ENST00000216877 NXPH1P58417 271 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 C8orf86Q6ZUL3 223 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 ARL17AQ8IVW1 177 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 GLMPQ8WWB7 406 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 FER1L6-AS2Q96M78 137 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 ZFHX4Q86UP3 3567 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 J3QT63 122 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 WIPF2Q8TF74 440 aaPredicted RBP11.95□□□□□ -0.5
PTPRA-201ENST00000216877 MBD6Q96DN6 1003 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 TCTEX1D4Q5JR98 221 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 IGF2BP2-AS1Q96M15 143 aa11.95□□□□□ -0.5
PTPRA-201ENST00000216877 PLXNB1O43157 2135 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 ZGRF1Q86YA3 2104 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 LTAP01374 205 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 ARL3P36405 182 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 SLC35E4Q6ICL7 350 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 ZNF503Q96F45 646 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 KMT2EQ8IZD2 1858 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 THADAQ6YHU6 1953 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 A0A1W2PRD5 423 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 A0A1W2PRF3 423 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 A0A1W2PRM7 423 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 CCL4P13236 92 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 Q6P435 159 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 TRAV8-1A0A0A6YYK1 113 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 PRR33A8MZF0 331 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 LOXL1Q08397 574 aaPredicted RBP11.94□□□□□ -0.5
PTPRA-201ENST00000216877 PDPNQ86YL7 162 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 RTL8AQ9BWD3 113 aa11.94□□□□□ -0.5
PTPRA-201ENST00000216877 AKAP6Q13023 2319 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 FAM90A27PA6NNH2 459 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 MGST3O14880 152 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 FKBP2P26885 142 aaKnown RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 RAC3P60763 192 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 TMEM178AQ8NBL3 297 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 SRSF12Q8WXF0 261 aaKnown RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 PRDM14Q9GZV8 571 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 TRBV20-1A0A075B6N2 111 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 F8W1H4 67 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 SP1P08047 785 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 RBPMS2Q6ZRY4 209 aaKnown RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 SLC25A45Q8N413 288 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 NFAM1Q8NET5 270 aaPredicted RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 C10orf142B7Z368 130 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 DSCR4P56555 118 aaPredicted RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 PRNTQ86SH4 94 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 DKK2Q9UBU2 259 aa11.93□□□□□ -0.5
PTPRA-201ENST00000216877 SLC25A10Q9UBX3 287 aaPredicted RBP11.93□□□□□ -0.5
PTPRA-201ENST00000216877 OOEPA6NGQ2 149 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 MOSP00540 346 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-201ENST00000216877 GTSCR1Q86UQ5 136 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 OR13A1Q8NGR1 328 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 HIST1H4GQ99525 98 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 SLC25A33Q9BSK2 321 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 TRBV6-6A0A0A6YYG2 114 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 ATP5L2Q7Z4Y8 100 aa11.92□□□□□ -0.5
PTPRA-201ENST00000216877 LINC00596Q86U02 117 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms