RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TMEM75Q8N9X5 138 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 PHF7Q9BWX1 381 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 LOXL2Q9Y4K0 774 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 LCNL1Q6ZST4 164 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF441Q8N8Z8 693 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TNFRSF18Q9Y5U5 241 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TRGV5A0A0B4J1U4 118 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV3-20A0A0C4DH32 117 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ATP5EP56381 51 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 VWC2Q2TAL6 325 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TM4SF20Q53R12 229 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ARID2Q68CP9 1835 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 SBF1O95248 1867 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TMSB15BA0A087X1C1 80 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 GFERP55789 205 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 C18orf15Q96N68 181 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 MRPL20Q9BYC9 149 aaKnown RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 COLQQ9Y215 455 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 SVILO95425 2214 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TRAV24A0A0B4J272 114 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 C5orf64Q2M2E5 130 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 LCN12Q6JVE5 192 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 FAM159AQ6UWV7 190 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 Q8N8P6 123 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 BEX4Q9NWD9 120 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 AMN1Q8IY45 258 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 NPIPB3Q92617 1050 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 VKORC1Q9BQB6 163 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 H3BT86 120 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TM4SF4P48230 202 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 SHISA5Q8N114 240 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 PIFOQ8TCI5 191 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 NRTNQ99748 197 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV3-15A0A0B4J1V0 119 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ABHD12Q8N2K0 398 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM86BQ8N661 226 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 DYNLRB2Q8TF09 96 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 LINC00312Q9Y6C7 94 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 M0R1B8 84 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SLC25A20O43772 301 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 MRPL14Q6P1L8 145 aaKnown RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 FOXI3A8MTJ6 420 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 C17orf98A8MV24 154 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SPATA46Q5T0L3 261 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SCN2AQ99250 2005 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 A0A0A6YYD4 124 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TAX1BP3O14907 124 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM196Q5HYL7 178 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SPAG8Q99932 426 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 PRO1854Q9UHT4 67 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV1-9A0A0C4DH69 117 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 hDV102S1A0JD36 115 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 LTBRP36941 435 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 HGFACQ04756 655 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 PDCD1Q15116 288 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM155Q4W5P6 130 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 ZC2HC1BQ5TFG8 222 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 EBLN2Q6P2I7 272 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 ACP7Q6ZNF0 438 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 ANKRD29Q8N6D5 301 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 BMPERQ8N8U9 685 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM14CQ9P0S9 112 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TEX48A0A1B0GUV7 120 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 C9JAW5 83 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 K7EQS6 105 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 MDP1Q86V88 176 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 C16orf92Q96LL3 132 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 EDA2RQ9HAV5 297 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 PSG8Q9UQ74 426 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 UQCRQO14949 82 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 EFEMP2O95967 443 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 PF4V1P10720 104 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SPATA25Q9BR10 227 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SCRT2Q9NQ03 307 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV3D-11A0A0A0MRZ8 115 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 OVOL1O14753 267 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV3-9P01782 118 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 FOXL2NBQ6ZUU3 175 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM52Q8NDY8 209 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 MYO7BQ6PIF6 2116 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV5-51A0A0C4DH38 117 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 CRYGSP22914 178 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 DUTP33316 252 aaKnown RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 RPL32P62910 135 aaKnown RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SFTA2Q6UW10 78 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 DEFB108BQ8NET1 73 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SCN1AP35498 2009 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 CASP8AP2Q9UKL3 1982 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TRAV26-1A0A087WT03 109 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 TRAV21A0A0B4J279 112 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV1D-13A0A0B4J2D9 117 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 B5MCH6 92 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV1-13P0DP09 117 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 C12orf76Q8N812 135 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-220ENST00000641603 ZIC4Q8N9L1 334 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 PRTN3P24158 256 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 FAM104BQ5XKR9 115 aa3.87□□□□□ -1.79
SCN1A-220ENST00000641603 SNAI2O43623 268 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 EGR1P18146 543 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms