RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 STAG3L3P0CL85 134 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 IER3P46695 156 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 PPT1P50897 306 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 ICAM4Q14773 271 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 AKIRIN2Q53H80 203 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 FAM78BQ5VT40 261 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 ZNF48Q96MX3 618 aaPredicted RBP13.23□□□□□ -0.29
CLN3-252ENST00000636907 S4R3C0 116 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 HECTD1Q9ULT8 2610 aa13.23□□□□□ -0.29
CLN3-252ENST00000636907 FASNP49327 2511 aaKnown RBP13.22□□□□□ -0.29
CLN3-252ENST00000636907 F8W036 122 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 CLN5O75503 358 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 NDUFB8O95169 186 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 BCL2P10415 239 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 BLCAPP62952 87 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 DEFA5Q01523 94 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 PMS2P11Q13670 270 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 IQCF2Q8IXL9 164 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 RXFP4Q8TDU9 374 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 TMEM37Q8WXS4 190 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 TEX15Q9BXT5 2789 aa13.22□□□□□ -0.29
CLN3-252ENST00000636907 APOC3P02656 99 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 OR5G3P0C626 314 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 HIST1H1BP16401 226 aaKnown RBP13.21□□□□□ -0.29
CLN3-252ENST00000636907 CRIP2P52943 208 aaPredicted RBP13.21□□□□□ -0.29
CLN3-252ENST00000636907 KLK9Q2XQG4 91 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 TIGITQ495A1 244 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 C10orf91Q5T1B1 145 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 MIR17HGQ75NE6 70 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 SLC35E3Q7Z769 313 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 SMDT1Q9H4I9 107 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 THYN1Q9P016 225 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 DOK5Q9P104 306 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 KLK9Q9UKQ9 250 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 FUT9Q9Y231 359 aa13.21□□□□□ -0.29
CLN3-252ENST00000636907 TRAV41A0A0B4J266 112 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 IGHG2P01859 326 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 ARL14EPLP0DKL9 152 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 KRTAP1-1Q07627 177 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 KHDC3LQ587J8 217 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 C19orf54Q5BKX5 351 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 Q6YL49 198 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 Q6ZS46 218 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 GATAD1Q8WUU5 269 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 C19orf24Q9BVV8 132 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 SEC11CQ9BY50 192 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 LINC00527Q9UJ94 153 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 FBXL7Q9UJT9 491 aa13.21□□□□□ -0.3
CLN3-252ENST00000636907 IFNA1P01562 189 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 IGKV1-17P01599 117 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 PATE2Q6UY27 113 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 IL17RELQ6ZVW7 336 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 OR5R1Q8NH85 324 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 AKAP9Q99996 3911 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 SLC35B3Q9H1N7 401 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 DNAJC4Q9NNZ3 241 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 ZNF355PQ9NSJ1 428 aa13.2□□□□□ -0.3
CLN3-252ENST00000636907 F8W735 103 aaPredicted RBP13.19□□□□□ -0.3
CLN3-252ENST00000636907 COX7A2P2O60397 106 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 CXorf1O96002 111 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 IGF1P05019 195 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 SRP19P09132 144 aaKnown RBP13.19□□□□□ -0.3
CLN3-252ENST00000636907 MFAP4P55083 255 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 RBMS3Q6XE24 437 aaKnown RBP13.19□□□□□ -0.3
CLN3-252ENST00000636907 SPNS3Q6ZMD2 512 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 OR1L4Q8NGR5 311 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 PFDN5Q99471 154 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 C21orf62Q9NYP8 219 aa13.19□□□□□ -0.3
CLN3-252ENST00000636907 CARHSP1Q9Y2V2 147 aaKnown RBP13.19□□□□□ -0.3
CLN3-252ENST00000636907 FLNAP21333 2647 aaKnown RBP13.18□□□□□ -0.3
CLN3-252ENST00000636907 TRBV9A0A0B4J1U6 114 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 IGHV3-23P01764 117 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 HSPB1P04792 205 aaKnown RBP13.18□□□□□ -0.3
CLN3-252ENST00000636907 PSG1P11464 419 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 NPBWR1P48145 328 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 PSMB3P49720 205 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 RHOGP84095 191 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 C10orf113Q5VZT2 155 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 CCDC28AQ8IWP9 274 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 RNF2Q99496 336 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 MRPL32Q9BYC8 188 aaKnown RBP13.18□□□□□ -0.3
CLN3-252ENST00000636907 PRDM13Q9H4Q3 707 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 MANBALQ9NQG1 85 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 VAX2Q9UIW0 290 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 VPREB3Q9UKI3 123 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 GNG7O60262 68 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 ORM2P19652 201 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 GUCA2BQ16661 112 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 Q56UQ5 140 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 MORN5Q5VZ52 161 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 OR1B1Q8NGR6 318 aa13.18□□□□□ -0.3
CLN3-252ENST00000636907 TECRQ9NZ01 308 aaKnown RBP13.18□□□□□ -0.3
CLN3-252ENST00000636907 HOXA3O43365 443 aaPredicted RBP13.17□□□□□ -0.3
CLN3-252ENST00000636907 CD5LO43866 347 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 GCHFRP30047 84 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 C15orf32Q32M92 178 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 TEX29Q8N6K0 151 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 VN1R17PQ8TDU5 208 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 NOL4LQ96MY1 436 aaPredicted RBP13.17□□□□□ -0.3
CLN3-252ENST00000636907 MS4A10Q96PG2 267 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms