RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C10orf99Q6UWK7 81 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 LCN15Q6UWW0 184 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 ZNF329Q86UD4 541 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 OR4X1Q8NH49 305 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 NF1P21359 2839 aa15.69■□□□□ 0.1
CLN3-250ENST00000636839 TRBV9A0A0B4J1U6 114 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 H2AFB1P0C5Y9 115 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 M6PRP20645 277 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 TIGITQ495A1 244 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 LYPD6BQ8NI32 183 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 KLK15Q9H2R5 256 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 ZNF702PQ9H963 129 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 TCRBV4S1A1TA0A5B7 111 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 AP4M1O00189 453 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 IGLC1P0CG04 106 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 SRSF3P84103 164 aaKnown RBP15.68■□□□□ 0.1
CLN3-250ENST00000636839 RBMS3Q6XE24 437 aaKnown RBP15.68■□□□□ 0.1
CLN3-250ENST00000636839 TMEM68Q96MH6 324 aa15.68■□□□□ 0.1
CLN3-250ENST00000636839 IGKV1-17P01599 117 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 SPATA31B1PQ5VZV4 182 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 DOK5Q9P104 306 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 CLN5O75503 358 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 ACOT6Q3I5F7 207 aaPredicted RBP15.67■□□□□ 0.1
CLN3-250ENST00000636839 SEPSECSQ9HD40 501 aaKnown RBP15.67■□□□□ 0.1
CLN3-250ENST00000636839 C21orf62Q9NYP8 219 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 THYN1Q9P016 225 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 PFDN2Q9UHV9 154 aa15.67■□□□□ 0.1
CLN3-250ENST00000636839 SRD5A1P18405 259 aa15.66■□□□□ 0.1
CLN3-250ENST00000636839 TMEM37Q8WXS4 190 aa15.66■□□□□ 0.1
CLN3-250ENST00000636839 RAB24Q969Q5 203 aa15.66■□□□□ 0.1
CLN3-250ENST00000636839 TMEM160Q9NX00 188 aa15.66■□□□□ 0.1
CLN3-250ENST00000636839 FAM181BA6NEQ2 426 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 OR2T8A6NH00 312 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 INAFM1C9JVW0 142 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 CFHR3Q02985 330 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 KLK9Q2XQG4 91 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 Q56UQ5 140 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 DPPA3Q6W0C5 159 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 TRGV9Q99603 122 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 NPFFR1Q9GZQ6 430 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 KLK9Q9UKQ9 250 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 CYB5BO43169 146 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 MBP02144 154 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 MFAP4P55083 255 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 NECAP1Q8NC96 275 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 MARC2Q969Z3 335 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 PRSS22Q9GZN4 317 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 MED9Q9NWA0 146 aa15.65■□□□□ 0.1
CLN3-250ENST00000636839 TRGV3P03979 118 aa15.64■□□□□ 0.09
CLN3-250ENST00000636839 PSG1P11464 419 aa15.64■□□□□ 0.09
CLN3-250ENST00000636839 HIST1H1BP16401 226 aaKnown RBP15.64■□□□□ 0.09
CLN3-250ENST00000636839 TMPRSS5Q9H3S3 457 aa15.64■□□□□ 0.09
CLN3-250ENST00000636839 TMEM231Q9H6L2 316 aa15.64■□□□□ 0.09
CLN3-250ENST00000636839 PSMB11A5LHX3 300 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 MAP1LC3B2A6NCE7 125 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 GNG7O60262 68 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 MORN5Q5VZ52 161 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 PATE2Q6UY27 113 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 MBD3L1Q8WWY6 194 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 CCDC140Q96MF4 163 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 CHRDL1Q9BU40 450 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 MAP1LC3BQ9GZQ8 125 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 IGHV3-35A0A0C4DH35 117 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 PF4V1P10720 104 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 TPPP2P59282 170 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 ZNF502Q8TBZ5 544 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 UHRF2Q96PU4 802 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 ACTR3CQ9C0K3 210 aaPredicted RBP15.63■□□□□ 0.09
CLN3-250ENST00000636839 KCNIP2Q9NS61 270 aa15.63■□□□□ 0.09
CLN3-250ENST00000636839 IGLV1-40P01703 118 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 CLEC3BP05452 202 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 ORM2P19652 201 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 NPBWR1P48145 328 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 CDC34P49427 236 aaPredicted RBP15.62■□□□□ 0.09
CLN3-250ENST00000636839 MIR17HGQ75NE6 70 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 TMEM86BQ8N661 226 aa15.62■□□□□ 0.09
CLN3-250ENST00000636839 CTXND1A0A1B0GTU2 59 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 SEC14L6B5MCN3 397 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 CTSGP08311 255 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 GPR183P32249 361 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 ADMP35318 185 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 FAM78BQ5VT40 261 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 VN1R17PQ8TDU5 208 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 CDC42EP3Q9UKI2 254 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 A0A1W2PPV4 95 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 ATP5G2Q06055 141 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 CLEC19AQ6UXS0 136 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 OR1B1Q8NGR6 318 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 RARRES2Q99969 163 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 SCRT1Q9BWW7 348 aa15.61■□□□□ 0.09
CLN3-250ENST00000636839 FN1P02751 2386 aaKnown RBP15.6■□□□□ 0.09
CLN3-250ENST00000636839 TRAV5A0A0B4J249 113 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 IGHV3-11P01762 117 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 RD3LP0DJH9 198 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 SELENOTP62341 195 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 ZNF414Q96IQ9 312 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 IGHV3OR16-8A0A075B7F1 116 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 C9JQL5 133 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 GATAD1Q8WUU5 269 aa15.6■□□□□ 0.09
CLN3-250ENST00000636839 DNAJC4Q9NNZ3 241 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms