RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NARS2Q96I59 477 aaKnown RBP11.68□□□□□ -0.54
CLN3-246ENST00000636228 HEYLQ9NQ87 328 aaPredicted RBP11.68□□□□□ -0.54
CLN3-246ENST00000636228 CELA1Q9UNI1 258 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 U3KQE9 123 aa11.68□□□□□ -0.54
CLN3-246ENST00000636228 DNAH6Q9C0G6 4158 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 TRAV30A0A087WSZ9 112 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 CD74P04233 296 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 IGLC1P0CG04 106 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 MEF2DQ14814 521 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 STEAP1BQ6NZ63 245 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 C16orf54Q6UWD8 224 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 SELENOHQ8IZQ5 122 aaKnown RBP11.67□□□□□ -0.54
CLN3-246ENST00000636228 CSNK1G2-AS1Q8NCQ2 148 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 Q8WTZ3 238 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 GLYATL2Q8WU03 294 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 GPR146Q96CH1 333 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 BCL7BQ9BQE9 202 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 RTBDNQ9BSG5 229 aaPredicted RBP11.67□□□□□ -0.54
CLN3-246ENST00000636228 TMEM222Q9H0R3 208 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 RBM38Q9H0Z9 239 aaKnown RBP11.67□□□□□ -0.54
CLN3-246ENST00000636228 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.67□□□□□ -0.54
CLN3-246ENST00000636228 CACNG5Q9UF02 275 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 TBC1D24Q9ULP9 559 aa11.67□□□□□ -0.54
CLN3-246ENST00000636228 IGHV4-4A0A075B6R2 117 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 TRAV10A0A0B4J240 114 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 TEX13DA0A0J9YY54 714 aaPredicted RBP11.66□□□□□ -0.54
CLN3-246ENST00000636228 RPS10-NUDT3A0A1W2PQS6 291 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 SCGB2A1O75556 95 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 CDS2O95674 445 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 HNRNPCP07910 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLN3-246ENST00000636228 ZNF182P17025 639 aaPredicted RBP11.66□□□□□ -0.54
CLN3-246ENST00000636228 TBPP20226 339 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 OR10J1P30954 320 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 HTR2BP41595 481 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 TMBIM6P55061 237 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 TAS2R19P59542 299 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 USF2Q15853 346 aaPredicted RBP11.66□□□□□ -0.54
CLN3-246ENST00000636228 TMEM41BQ5BJD5 291 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 OR1S2Q8NGQ3 325 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 RAB2BQ8WUD1 216 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 TMEM170AQ8WVE7 144 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 GLMPQ8WWB7 406 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 AP3S1Q92572 193 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 MIXL1Q9H2W2 232 aa11.66□□□□□ -0.54
CLN3-246ENST00000636228 HELTA6NFD8 242 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 CEBPZOSA8MTT3 80 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 AARDQ4LEZ3 155 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 C2orf83Q53S99 150 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 TMEM268Q5VZI3 342 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 OR52E5Q8NH55 327 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 NPIPB3Q92617 1050 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 SCRT1Q9BWW7 348 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 NAA60Q9H7X0 242 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 PRR13Q9NZ81 148 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 XCL2Q9UBD3 114 aa11.65□□□□□ -0.54
CLN3-246ENST00000636228 IL4P05112 153 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 DEFB1P60022 68 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 YPEL3P61236 119 aaPredicted RBP11.64□□□□□ -0.55
CLN3-246ENST00000636228 C12orf74Q32Q52 190 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 GSG1LQ6UXU4 331 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 FAM219AQ8IW50 185 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 RBPMSQ93062 196 aaKnown RBP11.64□□□□□ -0.55
CLN3-246ENST00000636228 ACY3Q96HD9 319 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 C14orf166Q9Y224 244 aaKnown RBP11.64□□□□□ -0.55
CLN3-246ENST00000636228 DNAH2Q9P225 4427 aa11.64□□□□□ -0.55
CLN3-246ENST00000636228 FAM90A26D6RGX4 464 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 CTDSP2O14595 271 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 B3GALNT1O75752 331 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 SLC25A4P12235 298 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 EIF2B2P49770 351 aaKnown RBP11.63□□□□□ -0.55
CLN3-246ENST00000636228 CENPSQ8N2Z9 138 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 SLC24A4Q8NFF2 622 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 RNASEH2CQ8TDP1 164 aaKnown RBP11.63□□□□□ -0.55
CLN3-246ENST00000636228 PCLOQ9Y6V0 5065 aa11.63□□□□□ -0.55
CLN3-246ENST00000636228 H3BMQ9 156 aa11.62□□□□□ -0.55
CLN3-246ENST00000636228 GABARAPH6UMI1 98 aa11.62□□□□□ -0.55
CLN3-246ENST00000636228 ZNF701M0R085 212 aaPredicted RBP11.62□□□□□ -0.55
CLN3-246ENST00000636228 RGS5O15539 181 aa11.62□□□□□ -0.55
CLN3-246ENST00000636228 RD3LP0DJH9 198 aa11.62□□□□□ -0.55
CLN3-246ENST00000636228 AP2S1P53680 142 aaPredicted RBP11.62□□□□□ -0.55
CLN3-246ENST00000636228 AGRNO00468 2067 aa11.62□□□□□ -0.55
CLN3-246ENST00000636228 DEFB131BA0A096LNP1 70 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 CRYM-AS1A6NIL9 109 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 DISC1C4P0D8 188 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 H3BMM0 161 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 BUB3O43684 328 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 NOL3O60936 208 aaKnown RBP11.61□□□□□ -0.55
CLN3-246ENST00000636228 IGKV3-20P01619 116 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 NPY1RP25929 384 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 FXYD7P58549 80 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 SNRPD3P62318 126 aaKnown RBP11.61□□□□□ -0.55
CLN3-246ENST00000636228 SPCS2Q15005 226 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 SIGLEC15Q6ZMC9 328 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 OR51G1Q8NGK1 321 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 C15orf40Q8WUR7 153 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 RNF126Q9BV68 326 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 NRN1Q9NPD7 142 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 NDUFA13Q9P0J0 144 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 GPR132Q9UNW8 380 aa11.61□□□□□ -0.55
CLN3-246ENST00000636228 FAT2Q9NYQ8 4349 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms