RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EPDR1Q9UM22 224 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 IGHV1-46P01743 117 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 STAG3L3P0CL85 134 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 C19orf54Q5BKX5 351 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 ORMDL3Q8N138 153 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 TCRBV4S1A1TA0A5B7 111 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 COX6B1P14854 86 aa11.61□□□□□ -0.55
CPSF1-212ENST00000616140 NBR2O15453 112 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 LGALS3P17931 250 aaKnown RBP11.6□□□□□ -0.55
CPSF1-212ENST00000616140 CLEC19AQ6UXS0 136 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 FER1L6-AS1Q8NA97 138 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 TSPOP30536 169 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 Q6AWC8 147 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM14EPQ6UXP3 125 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 RNF125Q96EQ8 232 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 METRNQ9UJH8 293 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 MUC6Q6W4X9 2439 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 SNRPD3P62318 126 aaKnown RBP11.6□□□□□ -0.55
CPSF1-212ENST00000616140 NEU4Q8WWR8 484 aaPredicted RBP11.6□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM242Q9NWH2 141 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 PEF1Q9UBV8 284 aaKnown RBP11.6□□□□□ -0.55
CPSF1-212ENST00000616140 CSPG4Q6UVK1 2322 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 TIMP3P35625 211 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 TMEM170BQ5T4T1 132 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 HIST3H2BBQ8N257 126 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 RNASE6Q93091 150 aaKnown RBP11.6□□□□□ -0.55
CPSF1-212ENST00000616140 DERL1Q9BUN8 251 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 ZGRF1Q86YA3 2104 aa11.6□□□□□ -0.55
CPSF1-212ENST00000616140 PRSS8Q16651 343 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 ZNF256Q9Y2P7 627 aaPredicted RBP11.59□□□□□ -0.55
CPSF1-212ENST00000616140 LAMTOR2Q9Y2Q5 125 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 SONP18583 2426 aaKnown RBP11.59□□□□□ -0.55
CPSF1-212ENST00000616140 TRAV5A0A0B4J249 113 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 CDKN1AP38936 164 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 LINC00205P59089 165 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 LINC01551Q86U37 167 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 SEPSECSQ9HD40 501 aaKnown RBP11.59□□□□□ -0.55
CPSF1-212ENST00000616140 A0A0G2JRQ6 117 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 CEACAM4O75871 244 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 PCP4P48539 62 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 SRSF4Q08170 494 aaKnown RBP11.59□□□□□ -0.55
CPSF1-212ENST00000616140 RRN3P1Q2M238 152 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 Q6ZRM9 215 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 WDR81Q562E7 1941 aa11.59□□□□□ -0.55
CPSF1-212ENST00000616140 E9PLN8 166 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 IGHV3-11P01762 117 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 AMBPP02760 352 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 CENPVQ7Z7K6 275 aaPredicted RBP11.58□□□□□ -0.55
CPSF1-212ENST00000616140 RAX2Q96IS3 184 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 AGMATQ9BSE5 352 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 OTORQ9NRC9 128 aa11.58□□□□□ -0.55
CPSF1-212ENST00000616140 WISP1O95388 367 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 PRB4P10163 310 aaPredicted RBP11.58□□□□□ -0.56
CPSF1-212ENST00000616140 SMAGPQ0VAQ4 97 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 SPATA31B1PQ5VZV4 182 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 TTC9CQ8N5M4 171 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 BMPERQ8N8U9 685 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 FOXC2Q99958 501 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 TRAV3A0A0B4J244 114 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 FAM90A9PA6NNJ1 464 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 ADCYAP1P18509 176 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 KIR3DL3Q8N743 410 aa11.58□□□□□ -0.56
CPSF1-212ENST00000616140 TIMM23O14925 209 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 ATP5LO75964 103 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 B3GALT5-AS1P59052 145 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 ADIPOQQ15848 244 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 LINC00473A8K010 186 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 HAX1O00165 279 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 CD177Q8N6Q3 437 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
CPSF1-212ENST00000616140 PLSCR4Q9NRQ2 329 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 FABP5P3A8MUU1 101 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 ASIPP42127 132 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 LHFPL4Q7Z7J7 247 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 YLPM1P49750 1951 aaKnown RBP11.57□□□□□ -0.56
CPSF1-212ENST00000616140 PIEZO1Q92508 2521 aa11.57□□□□□ -0.56
CPSF1-212ENST00000616140 A0A1B0GW15 77 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 PAPPA-AS1Q5QFB9 102 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 C20orf204Q6ZNR8 217 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 PSG8Q9UQ74 426 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 HS3ST6Q96QI5 342 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 SMIM13P0DJ93 91 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 PVRIGQ6DKI7 326 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 COQ2Q96H96 371 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 DUX5Q96PT3 197 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 SCGB3A1Q96QR1 104 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 BEX4Q9NWD9 120 aaPredicted RBP11.56□□□□□ -0.56
CPSF1-212ENST00000616140 ZNF257Q9Y2Q1 563 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 MYLKQ15746 1914 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 A0A0G2JLM5 398 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 A0A1B0GW64 132 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 E9PQ18 207 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 ZNF524Q96C55 264 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 GNB1LQ9BYB4 327 aa11.56□□□□□ -0.56
CPSF1-212ENST00000616140 C9JQL5 133 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 Q6P435 159 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 C7orf69Q9H7B7 122 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 IGKV3OR2-268A0A0C4DH90 116 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 PSMB11A5LHX3 300 aa11.55□□□□□ -0.56
CPSF1-212ENST00000616140 LINC00614P0C842 121 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms