RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 FFAR4Q5NUL3 377 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 ACSM6Q6P461 480 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 TEPPQ6URK8 271 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 P2RX4Q99571 388 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 MGST2Q99735 147 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 CITED1Q99966 193 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 FAM103A1Q9BTL3 118 aaKnown RBP7.89□□□□□ -1.15
UPF1-213ENST00000601981 RPRMQ9NS64 109 aa7.89□□□□□ -1.15
UPF1-213ENST00000601981 G3V318 75 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 M0QZ24 198 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 CORTO00230 105 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 IGHG4P01861 327 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 PF4V1P10720 104 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 ELLP55199 621 aaPredicted RBP7.88□□□□□ -1.15
UPF1-213ENST00000601981 RAB31Q13636 194 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 ACOT6Q3I5F7 207 aaPredicted RBP7.88□□□□□ -1.15
UPF1-213ENST00000601981 SPSB3Q6PJ21 355 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 SLC16A13Q7RTY0 426 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 TMEM144Q7Z5S9 345 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 ZNF329Q86UD4 541 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 BPIFCQ8NFQ6 507 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 OR1P1Q8NH06 330 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 WIPF2Q8TF74 440 aaPredicted RBP7.88□□□□□ -1.15
UPF1-213ENST00000601981 MBD3L1Q8WWY6 194 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 RCC1LQ96I51 464 aaKnown RBP7.88□□□□□ -1.15
UPF1-213ENST00000601981 SLC35E1Q96K37 410 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 LINC00052Q96N35 136 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 PBDC1Q9BVG4 233 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 GGTLC1Q9BX51 225 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 VSIRQ9H7M9 311 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 ZNF355PQ9NSJ1 428 aa7.88□□□□□ -1.15
UPF1-213ENST00000601981 TSSC4Q9Y5U2 329 aaPredicted RBP7.88□□□□□ -1.15
UPF1-213ENST00000601981 CTXND1A0A1B0GTU2 59 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 AGPAT2O15120 278 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 CD5P06127 495 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 CD28P10747 220 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 AREGP15514 252 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 M6PRP20645 277 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 PPIFP30405 207 aaKnown RBP7.87□□□□□ -1.15
UPF1-213ENST00000601981 RPL29P47914 159 aaKnown RBP7.87□□□□□ -1.15
UPF1-213ENST00000601981 CFHR3Q02985 330 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 ZNF726P1Q15940 193 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 ETFRF1Q6IPR1 90 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 NDUFA11Q86Y39 141 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 C11orf44Q8N8P7 122 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 FAM110DQ8TAY7 271 aaPredicted RBP7.87□□□□□ -1.15
UPF1-213ENST00000601981 SFT2D1Q8WV19 159 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 F11RQ9Y624 299 aaKnown RBP7.87□□□□□ -1.15
UPF1-213ENST00000601981 PXMP4Q9Y6I8 212 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 TENM1Q9UKZ4 2725 aa7.87□□□□□ -1.15
UPF1-213ENST00000601981 A0A0G2JLM5 398 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 TMEM218A2RU14 115 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 MAP1LC3B2A6NCE7 125 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 SEC14L6B5MCN3 397 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 IGLV1-40P01703 118 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 REG1AP05451 166 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 EGR2P11161 476 aaPredicted RBP7.86□□□□□ -1.15
UPF1-213ENST00000601981 DEFA4P12838 97 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 PSMB8P28062 276 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 PMS2P11Q13670 270 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 GAMTQ14353 236 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 PEA15Q15121 130 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 GUK1Q16774 197 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 C19orf54Q5BKX5 351 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 RPP25LQ8N5L8 163 aaKnown RBP7.86□□□□□ -1.15
UPF1-213ENST00000601981 TTC9CQ8N5M4 171 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 OR5T1Q8NG75 326 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 OR10G4Q8NGN3 311 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 OR10G9Q8NGN4 311 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 OR10G7Q8NGN6 311 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 OR1L6Q8NGR2 347 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 NARS2Q96I59 477 aaKnown RBP7.86□□□□□ -1.15
UPF1-213ENST00000601981 CITED2Q99967 270 aaPredicted RBP7.86□□□□□ -1.15
UPF1-213ENST00000601981 SCRT1Q9BWW7 348 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 ACTR3CQ9C0K3 210 aaPredicted RBP7.86□□□□□ -1.15
UPF1-213ENST00000601981 MAP1LC3BQ9GZQ8 125 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 SMDT1Q9H4I9 107 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 TREM1Q9NP99 234 aa7.86□□□□□ -1.15
UPF1-213ENST00000601981 NPIPB5A8MRT5 1133 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 YIF1AO95070 293 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 TRGV3P03979 118 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 CRYGCP07315 174 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 APELAP0DMC3 54 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 HIST1H1BP16401 226 aaKnown RBP7.85□□□□□ -1.15
UPF1-213ENST00000601981 CTRB1P17538 263 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 RAB9AP51151 201 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 MFAP2P55001 183 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 TPPP2P59282 170 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 KRTAP10-3P60369 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 B2MP61769 119 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 SRSF3P84103 164 aaKnown RBP7.85□□□□□ -1.15
UPF1-213ENST00000601981 PRR20EP86478 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 PRR20CP86479 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 PRR20DP86480 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 PRR20BP86481 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 PRR20AP86496 221 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 MIC13Q5XKP0 118 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 CTRB2Q6GPI1 263 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 C10orf99Q6UWK7 81 aa7.85□□□□□ -1.15
UPF1-213ENST00000601981 SSX7Q7RTT5 188 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms