RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 DHRS2Q13268 280 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 OXA1LQ15070 435 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 USF2Q15853 346 aaPredicted RBP4.32□□□□□ -1.72
VRK3-220ENST00000600259 C1orf134Q5TEV5 83 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 GDF5OSQ5U4N7 250 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 PRSS54Q6PEW0 395 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 C1orf158Q8N1D5 194 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 TMEM170AQ8WVE7 144 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 FCGR1BQ92637 280 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 TMEM230Q96A57 120 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 CLUHP3Q96NS8 147 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 TP53RKQ96S44 253 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 C1QTNF4Q9BXJ3 329 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 YTHDF1Q9BYJ9 559 aaKnown RBP4.32□□□□□ -1.72
VRK3-220ENST00000600259 RAB26Q9ULW5 256 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 HLA-DRB4X5D2U9 266 aa4.32□□□□□ -1.72
VRK3-220ENST00000600259 TRAV30A0A087WSZ9 112 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 LOC100506127A0A0U1RQW1 187 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 TMEM189A5PLL7 270 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 CORTO00230 105 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 HNRNPCP07910 306 aaKnown RBP eCLIP4.31□□□□□ -1.72
VRK3-220ENST00000600259 NKX2-1P43699 371 aaPredicted RBP4.31□□□□□ -1.72
VRK3-220ENST00000600259 HSPA13P48723 471 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 AP2S1P53680 142 aaPredicted RBP4.31□□□□□ -1.72
VRK3-220ENST00000600259 SUB1P53999 127 aaKnown RBP eCLIP4.31□□□□□ -1.72
VRK3-220ENST00000600259 FAM222AQ5U5X8 452 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 LHFPL1Q86WI0 220 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 Q8N1X5 172 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 CENPSQ8N2Z9 138 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 ZNF709Q8N972 641 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 NIPSNAP3BQ9BS92 247 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 NRN1Q9NPD7 142 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 NACAE9PAV3 2078 aa4.31□□□□□ -1.72
VRK3-220ENST00000600259 A8MTW9 85 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 C16orf90A8MZG2 172 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 SOCS3O14543 225 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 PI3P19957 117 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 LORP23490 312 aaPredicted RBP4.3□□□□□ -1.72
VRK3-220ENST00000600259 UCP1P25874 307 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 OPRK1P41145 380 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 RND2P52198 227 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 EMP1P54849 157 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 FXYD7P58549 80 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 NUTF2P61970 127 aaKnown RBP4.3□□□□□ -1.72
VRK3-220ENST00000600259 TSPAN5P62079 268 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 SP6Q3SY56 376 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 C2orf83Q53S99 150 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 SOHLH1Q5JUK2 328 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 UBE2NLQ5JXB2 153 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 TMEM69Q5SWH9 247 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 TMEM88Q6PEY1 159 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 GSG1LQ6UXU4 331 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 SLC35G3Q8N808 338 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 MAPKAPK5-AS1Q8N8E1 139 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 SAMD12Q8N8I0 201 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 OR1S2Q8NGQ3 325 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 ZNRF2Q8NHG8 242 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 Q8WTZ3 238 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 C17orf77Q96MU5 243 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 WDR12Q9GZL7 423 aaKnown RBP4.3□□□□□ -1.72
VRK3-220ENST00000600259 SAV1Q9H4B6 383 aaPredicted RBP4.3□□□□□ -1.72
VRK3-220ENST00000600259 RFNGQ9Y644 331 aa4.3□□□□□ -1.72
VRK3-220ENST00000600259 FAT1Q14517 4588 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 C3orf85A0A1B0GTC6 90 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 A6NHS1 94 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 M0QYG6 137 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 TOMM40O96008 361 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 IGKV3-20P01619 116 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 PRM2P04554 102 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 PSG1P11464 419 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 ELK1P19419 428 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 S100GP29377 79 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 OR10J1P30954 320 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 HTR2BP41595 481 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 EIF2B2P49770 351 aaKnown RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 PAX9P55771 341 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 PIGPP57054 158 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 FAM3BP58499 235 aaPredicted RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 SPCS3P61009 180 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 SNRPD3P62318 126 aaKnown RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 ZNF79Q15937 498 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 AMTNQ6UX39 209 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 SIGLEC15Q6ZMC9 328 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 CROCCP3Q8IVE0 287 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 UBE2DNLQ8IWF7 75 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 OR52E5Q8NH55 327 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 LHFPL5Q8TAF8 219 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 GLYATL2Q8WU03 294 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 NPIPB3Q92617 1050 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 YIPF6Q96EC8 236 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 ZNF486Q96H40 463 aaPredicted RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 NARS2Q96I59 477 aaKnown RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 SLC35B3Q9H1N7 401 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 SCPEP1Q9HB40 452 aa4.29□□□□□ -1.72
VRK3-220ENST00000600259 YTHDF2Q9Y5A9 579 aaKnown RBP4.29□□□□□ -1.72
VRK3-220ENST00000600259 IGKV1D-37A0A075B6S9 117 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 IGHV3OR16-12A0A075B7B8 117 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 NBDYA0A0U1RRE5 68 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 TEX48A0A1B0GUV7 120 aa4.28□□□□□ -1.72
VRK3-220ENST00000600259 RPS10-NUDT3A0A1W2PQS6 291 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms