RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NOXA1Q86UR1 476 aa7.18□□□□□ -1.26
VRK3-216ENST00000599342 SELENOHQ8IZQ5 122 aaKnown RBP7.18□□□□□ -1.26
VRK3-216ENST00000599342 LHFPL5Q8TAF8 219 aa7.18□□□□□ -1.26
VRK3-216ENST00000599342 RNASEH2CQ8TDP1 164 aaKnown RBP7.18□□□□□ -1.26
VRK3-216ENST00000599342 Q8WTZ3 238 aa7.18□□□□□ -1.26
VRK3-216ENST00000599342 CCDC59Q9P031 241 aaKnown RBP7.18□□□□□ -1.26
VRK3-216ENST00000599342 HELTA6NFD8 242 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 K7EQG2 157 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 NOL3O60936 208 aaKnown RBP7.17□□□□□ -1.26
VRK3-216ENST00000599342 NXPH3O95157 252 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 IGKV1-17P01599 117 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 HNRNPCP07910 306 aaKnown RBP eCLIP7.17□□□□□ -1.26
VRK3-216ENST00000599342 ZNF688P0C7X2 276 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 SULT1A3P0DMM9 295 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 SULT1A4P0DMN0 295 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 SPP1P10451 314 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 OR10J1P30954 320 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 ALDH3B2P48448 385 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 NANOS2P60321 138 aaKnown RBP7.17□□□□□ -1.26
VRK3-216ENST00000599342 TMEM41BQ5BJD5 291 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 MORN3Q6PF18 240 aaPredicted RBP7.17□□□□□ -1.26
VRK3-216ENST00000599342 CLVS1Q8IUQ0 354 aaPredicted RBP7.17□□□□□ -1.26
VRK3-216ENST00000599342 OR51S1Q8NGJ8 323 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 RAB2BQ8WUD1 216 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 GPR146Q96CH1 333 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 SCGB3A2Q96PL1 93 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 SCP2D1Q9UJQ7 156 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 GPR132Q9UNW8 380 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 KCNIP3Q9Y2W7 256 aa7.17□□□□□ -1.26
VRK3-216ENST00000599342 BIRC6Q9NR09 4857 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 ANKRD20A5PA0PJZ0 165 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 DEFB4AO15263 64 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 IFNA10P01566 189 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 IGLC1P0CG04 106 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 NPY1RP25929 384 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 AP2S1P53680 142 aaPredicted RBP7.16□□□□□ -1.26
VRK3-216ENST00000599342 YPEL3P61236 119 aaPredicted RBP7.16□□□□□ -1.26
VRK3-216ENST00000599342 DHRS2Q13268 280 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 PRSS54Q6PEW0 395 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 TRPT1Q86TN4 253 aaKnown RBP7.16□□□□□ -1.26
VRK3-216ENST00000599342 DCANP1Q8TF63 244 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 IL22RA2Q969J5 263 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 ACY3Q96HD9 319 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 MCUBQ9NWR8 336 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 RSL24D1Q9UHA3 163 aaKnown RBP7.16□□□□□ -1.26
VRK3-216ENST00000599342 TMEM56-RWDD3S4R434 201 aa7.16□□□□□ -1.26
VRK3-216ENST00000599342 KNCNA6PVL3 124 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 GSTZ1O43708 216 aaPredicted RBP7.15□□□□□ -1.26
VRK3-216ENST00000599342 IL4P05112 153 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 ANXA3P12429 323 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 CCR6P51684 374 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 TMBIM6P55061 237 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 SNRPD3P62318 126 aaKnown RBP7.15□□□□□ -1.26
VRK3-216ENST00000599342 PSMG4Q5JS54 123 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 ACTL10Q5JWF8 245 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 LGALS9CQ6DKI2 356 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 C16orf54Q6UWD8 224 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 CENPSQ8N2Z9 138 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 DYNC2LI1Q8TCX1 351 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 C2CD4CQ8TF44 421 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 GLMPQ8WWB7 406 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 NPIPB3Q92617 1050 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 BCL7BQ9BQE9 202 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 PRR13Q9NZ81 148 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 U3KQ87 197 aa7.15□□□□□ -1.26
VRK3-216ENST00000599342 A0A0B4J2A0 478 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 PIGBOS1A0A0B4J2F0 54 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 C11orf94C9JXX5 98 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 TOMM40O96008 361 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 RD3LP0DJH9 198 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 MIFP14174 115 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 AKR1C4P17516 323 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 C4BPBP20851 252 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 FAUP35544 74 aaKnown RBP7.14□□□□□ -1.27
VRK3-216ENST00000599342 TCTAP57738 103 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 NUTF2P61970 127 aaKnown RBP7.14□□□□□ -1.27
VRK3-216ENST00000599342 SRPXP78539 464 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 SMCO1Q147U7 214 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 USF2Q15853 346 aaPredicted RBP7.14□□□□□ -1.27
VRK3-216ENST00000599342 NMSQ5H8A3 153 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 LGI3Q8N145 548 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 Q8NAQ8 132 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 DTD1Q8TEA8 209 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 SHPKQ9UHJ6 478 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 U3KQE9 123 aa7.14□□□□□ -1.27
VRK3-216ENST00000599342 IGHV4-28A0A0C4DH34 117 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 FABP12A6NFH5 140 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 DEDDO75618 318 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 NUP62P37198 522 aaPredicted RBP7.13□□□□□ -1.27
VRK3-216ENST00000599342 SIGLEC15Q6ZMC9 328 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 RPP25LQ8N5L8 163 aaKnown RBP7.13□□□□□ -1.27
VRK3-216ENST00000599342 OR51G1Q8NGK1 321 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 OR1S1Q8NH92 325 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 TMEM170AQ8WVE7 144 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 RAB40CQ96S21 281 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 HRH4Q9H3N8 390 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 NRN1Q9NPD7 142 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 HSPB7Q9UBY9 170 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 PFDN2Q9UHV9 154 aa7.13□□□□□ -1.27
VRK3-216ENST00000599342 ZFP92A6NM28 416 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms