RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TNFRSF9Q07011 255 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 SMCO1Q147U7 214 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 DEFB135Q30KP9 77 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 CCDC190Q86UF4 302 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 NOXA1Q86UR1 476 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 Q8WTZ3 238 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 TRIM63Q969Q1 353 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 METTL26Q96S19 204 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 CSTL1Q9H114 145 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 TMEM231Q9H6L2 316 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 IGLC1P0CG04 106 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 NPY1RP25929 384 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 RND2P52198 227 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 YPEL3P61236 119 aaPredicted RBP11.11□□□□□ -0.63
LIG1-215ENST00000597901 RBMS2Q15434 407 aaKnown RBP11.11□□□□□ -0.63
LIG1-215ENST00000597901 ZNF79Q15937 498 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 ETFRF1Q6IPR1 90 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 OR1S2Q8NGQ3 325 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 RBM38Q9H0Z9 239 aaKnown RBP11.11□□□□□ -0.63
LIG1-215ENST00000597901 RBKSQ9H477 322 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 HSPB7Q9UBY9 170 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 U3KQ87 197 aa11.11□□□□□ -0.63
LIG1-215ENST00000597901 SACSQ9NZJ4 4579 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 TRAV2A0A0B4J234 112 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 A0A0J9YWU9 116 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 IFNA10P01566 189 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 OR10J1P30954 320 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 SRPXP78539 464 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 TMEM128Q5BJH2 165 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 TMED4Q7Z7H5 227 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 DTD1Q8TEA8 209 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 NPIPB3Q92617 1050 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 SLC25A21Q9BQT8 299 aaPredicted RBP11.1□□□□□ -0.63
LIG1-215ENST00000597901 U3KQE9 123 aa11.1□□□□□ -0.63
LIG1-215ENST00000597901 STARD9Q9P2P6 4700 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 MPTX1A8MV57 137 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 ZNF701M0R085 212 aaPredicted RBP11.09□□□□□ -0.63
LIG1-215ENST00000597901 P2RY1P47900 373 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 ATP5IP56385 69 aaPredicted RBP11.09□□□□□ -0.63
LIG1-215ENST00000597901 DEFB131AP59861 70 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 LYG2Q86SG7 212 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 FAM24BQ8N5W8 94 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 OR1S1Q8NH92 325 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 DEDD2Q8WXF8 326 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 RABAC1Q9UI14 185 aa11.09□□□□□ -0.63
LIG1-215ENST00000597901 PIGBOS1A0A0B4J2F0 54 aa11.08□□□□□ -0.64
LIG1-215ENST00000597901 PITX3O75364 302 aa11.08□□□□□ -0.64
LIG1-215ENST00000597901 EWSR1Q01844 656 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIG1-215ENST00000597901 LRTM2Q8N967 370 aa11.08□□□□□ -0.64
LIG1-215ENST00000597901 ACY3Q96HD9 319 aa11.08□□□□□ -0.64
LIG1-215ENST00000597901 GRAMD2BQ96HH9 432 aa11.08□□□□□ -0.64
LIG1-215ENST00000597901 NARS2Q96I59 477 aaKnown RBP11.08□□□□□ -0.64
LIG1-215ENST00000597901 RYR2Q92736 4967 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 CSMD3Q7Z407 3707 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 DUXBA0A1W2PPF3 345 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 K7EQG2 157 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 IFNA4P05014 189 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 RD3LP0DJH9 198 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 VAMP1P23763 118 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 GPX4P36969 197 aaPredicted RBP11.07□□□□□ -0.64
LIG1-215ENST00000597901 LEMD1Q68G75 181 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 C16orf54Q6UWD8 224 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 STXBP6Q8NFX7 210 aa11.07□□□□□ -0.64
LIG1-215ENST00000597901 SFT2D2O95562 160 aa11.06□□□□□ -0.64
LIG1-215ENST00000597901 TOMM40O96008 361 aa11.06□□□□□ -0.64
LIG1-215ENST00000597901 HNRNPCP07910 306 aaKnown RBP eCLIP11.06□□□□□ -0.64
LIG1-215ENST00000597901 PSG1P11464 419 aa11.06□□□□□ -0.64
LIG1-215ENST00000597901 USF2Q15853 346 aaPredicted RBP11.06□□□□□ -0.64
LIG1-215ENST00000597901 SPANXN2Q5MJ10 180 aa11.06□□□□□ -0.64
LIG1-215ENST00000597901 SRRQ9GZT4 340 aa11.06□□□□□ -0.64
LIG1-215ENST00000597901 HELTA6NFD8 242 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 IL4P05112 153 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 SLC25A6P12236 298 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 ATF4P18848 351 aaPredicted RBP11.05□□□□□ -0.64
LIG1-215ENST00000597901 AP2S1P53680 142 aaPredicted RBP11.05□□□□□ -0.64
LIG1-215ENST00000597901 PPP1R1AQ13522 171 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 GAMTQ14353 236 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 BAK1Q16611 211 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 GATAD1Q8WUU5 269 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 GLMPQ8WWB7 406 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 RARRES2Q99969 163 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 TMED3Q9Y3Q3 217 aa11.05□□□□□ -0.64
LIG1-215ENST00000597901 CXorf65A6NEN9 183 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 BUB3O43684 328 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 EIF2B2P49770 351 aaKnown RBP11.04□□□□□ -0.64
LIG1-215ENST00000597901 PMS2P11Q13670 270 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 STHQ8IWL8 128 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 CENPSQ8N2Z9 138 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 OR51G1Q8NGK1 321 aa11.04□□□□□ -0.64
LIG1-215ENST00000597901 FAM90A26D6RGX4 464 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 MED6O75586 246 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 HOXB5P09067 269 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 ZNF688P0C7X2 276 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 IAPPP10997 89 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 INPP1P49441 399 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 RAB11AP62491 216 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 DHRS2Q13268 280 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 TMEM217Q8N7C4 229 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 OR11H2Q8NH07 326 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms