RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 KIR2DL5BA0A0G2JPC4 375 aa12.46□□□□□ -0.42
UPF1-204ENST00000596842 TAS2R45P59539 299 aa12.46□□□□□ -0.42
UPF1-204ENST00000596842 FAM27E3Q08E93 113 aa12.46□□□□□ -0.42
UPF1-204ENST00000596842 KIR2DL5AQ8N109 375 aa12.46□□□□□ -0.42
UPF1-204ENST00000596842 RBMXL3Q8N7X1 1067 aaKnown RBP12.46□□□□□ -0.42
UPF1-204ENST00000596842 TP73-AS1Q9UF72 201 aa12.46□□□□□ -0.42
UPF1-204ENST00000596842 TRAV17A0A0B4J275 112 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 OR52E5Q8NH55 327 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 DLX1P56177 255 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 HCP5Q6MZN7 132 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 NPIPB3Q92617 1050 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 TMEM186Q96B77 213 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 RNF7Q9UBF6 113 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 TMEM265A0A087WTH1 108 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 TEX50A0A1B0GTY4 177 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 APCSP02743 223 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 TMEM14BQ9NUH8 114 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 PRNDQ9UKY0 176 aa12.45□□□□□ -0.42
UPF1-204ENST00000596842 ANKRD11Q6UB99 2663 aaPredicted RBP12.44□□□□□ -0.42
UPF1-204ENST00000596842 MOSP00540 346 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 GPX1P07203 203 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 KIR2DS2P43631 304 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 C19orf35Q6ZS72 473 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 MRPL20Q9BYC9 149 aaKnown RBP12.44□□□□□ -0.42
UPF1-204ENST00000596842 FOXA3P55318 350 aaPredicted RBP12.44□□□□□ -0.42
UPF1-204ENST00000596842 DIAPH2-AS1Q14236 149 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 PMCHL1Q16048 86 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 OR10X1Q8NGY0 326 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 CCL17Q92583 94 aa12.44□□□□□ -0.42
UPF1-204ENST00000596842 A0A1B0GV72 72 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 A0A1W2PN81 502 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 E7EUB6 86 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 C8orf88P0DMB2 117 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 CT45A6P0DMU7 189 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 CT45A5P0DMU8 189 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 CT45A7P0DMV0 189 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 TSPOP30536 169 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 PRR20EP86478 221 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 PRR20CP86479 221 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 PRR20DP86480 221 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 PRR20BP86481 221 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 PRR20AP86496 221 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 ZNF503Q96F45 646 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 C20orf144Q9BQM9 153 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 MALRD1Q5VYJ5 2156 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 F2RL2O00254 374 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 AREGP15514 252 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 RPL8P62917 257 aaKnown RBP12.43□□□□□ -0.42
UPF1-204ENST00000596842 MBNL2Q5VZF2 373 aaKnown RBP12.43□□□□□ -0.42
UPF1-204ENST00000596842 CDC42EP3Q9UKI2 254 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 FOXA2Q9Y261 457 aaPredicted RBP12.43□□□□□ -0.42
UPF1-204ENST00000596842 AMMECR1Q9Y4X0 333 aaPredicted RBP12.43□□□□□ -0.42
UPF1-204ENST00000596842 SLC25A15Q9Y619 301 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 A0A1W2PS18 150 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 CSN3P07498 182 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 ZNF137PP52743 207 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 ERHP84090 104 aaKnown RBP12.43□□□□□ -0.42
UPF1-204ENST00000596842 SLAQ13239 276 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 TM4SF20Q53R12 229 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 DDB2Q92466 427 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 HILPDAQ9Y5L2 63 aa12.43□□□□□ -0.42
UPF1-204ENST00000596842 NDUFB8O95169 186 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 OR1B1Q8NGR6 318 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 TRGV8A0A0C4DH27 118 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 UPK2O00526 184 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 ZNF883P0CG24 379 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 CX3CL1P78423 397 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 ZNF474Q6S9Z5 364 aaPredicted RBP12.42□□□□□ -0.42
UPF1-204ENST00000596842 TMEM136Q6ZRR5 245 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 C22orf34Q6ZV56 151 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 SSX8Q7RTT4 187 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 GSX1Q9H4S2 264 aaPredicted RBP12.42□□□□□ -0.42
UPF1-204ENST00000596842 C9JCJ5 164 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 CORTO00230 105 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 C3orf79P0CE67 100 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 TMPRSS3P57727 454 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 UBE2G1P62253 170 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 NEUROG1Q92886 237 aa12.42□□□□□ -0.42
UPF1-204ENST00000596842 MUC21A0A0G2JKD1 596 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 MUC21A0A140T8X8 626 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 ZNF207O43670 478 aaKnown RBP12.41□□□□□ -0.42
UPF1-204ENST00000596842 MUC21Q5SSG8 566 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 WDR73Q6P4I2 378 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 PAXXQ9BUH6 204 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 PLSCR4Q9NRQ2 329 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 DKK4Q9UBT3 224 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 CSMD1Q96PZ7 3565 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 LOC105371242A0A075B767 164 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 SLC25A5P05141 298 aaKnown RBP12.41□□□□□ -0.42
UPF1-204ENST00000596842 PTPRBP23467 1997 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 PRCDQ00LT1 54 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 OR5B3Q8NH48 314 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 GNB1LQ9BYB4 327 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 SAP30LQ9HAJ7 183 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 SPTAN1Q13813 2472 aaKnown RBP12.41□□□□□ -0.42
UPF1-204ENST00000596842 C19orf67A6NJJ6 358 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 ISLRO14498 428 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 AMY1AP04745 511 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 TEX43Q6ZNM6 134 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 C1orf174Q8IYL3 243 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms