RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 KCNIP3Q9Y2W7 256 aa9.6□□□□□ -0.87
LIG1-212ENST00000596549 TRAV2A0A0B4J234 112 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 FAUP35544 74 aaKnown RBP9.59□□□□□ -0.87
LIG1-212ENST00000596549 P2RY1P47900 373 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 CCR6P51684 374 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 RBMS2Q15434 407 aaKnown RBP9.59□□□□□ -0.87
LIG1-212ENST00000596549 USF2Q15853 346 aaPredicted RBP9.59□□□□□ -0.87
LIG1-212ENST00000596549 LEMD1Q68G75 181 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 TMED4Q7Z7H5 227 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 LGI3Q8N145 548 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 TOMM5Q8N4H5 51 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 STPG3Q8N7X2 389 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 OR1S2Q8NGQ3 325 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 DTD1Q8TEA8 209 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 SCGB3A2Q96PL1 93 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 METTL26Q96S19 204 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 RBKSQ9H477 322 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 PLECQ15149 4684 aaKnown RBP9.59□□□□□ -0.87
LIG1-212ENST00000596549 AGRNO00468 2067 aa9.59□□□□□ -0.87
LIG1-212ENST00000596549 TRAV30A0A087WSZ9 112 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 K7EQG2 157 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 CD5P06127 495 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 SLC25A4P12235 298 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 NPPCP23582 126 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 OR10J1P30954 320 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 DEFB131AP59861 70 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 SRRQ9GZT4 340 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 TMEM231Q9H6L2 316 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 U3KQE9 123 aa9.58□□□□□ -0.88
LIG1-212ENST00000596549 ALMS1Q8TCU4 4167 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 PITX3O75364 302 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 SCGB2A1O75556 95 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 ANXA3P12429 323 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 S100A5P33763 92 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 AP3S2P59780 193 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 YPEL3P61236 119 aaPredicted RBP9.57□□□□□ -0.88
LIG1-212ENST00000596549 PAFAH1B2P68402 229 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 SRPXP78539 464 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 PMS2P11Q13670 270 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 TMEM128Q5BJH2 165 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 STXBP6Q8NFX7 210 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 DCANP1Q8TF63 244 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 GLMPQ8WWB7 406 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 NPIPB3Q92617 1050 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 ACY3Q96HD9 319 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 RABAC1Q9UI14 185 aa9.57□□□□□ -0.88
LIG1-212ENST00000596549 DUXBA0A1W2PPF3 345 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 A0A1W2PS18 150 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 ZNF701M0R085 212 aaPredicted RBP9.56□□□□□ -0.88
LIG1-212ENST00000596549 DNASE2O00115 360 aaPredicted RBP9.56□□□□□ -0.88
LIG1-212ENST00000596549 TOMM40O96008 361 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 IFNA10P01566 189 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 IL4P05112 153 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 VAMP1P23763 118 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 CMC4P56277 68 aaPredicted RBP9.56□□□□□ -0.88
LIG1-212ENST00000596549 RPL11P62913 178 aaKnown RBP9.56□□□□□ -0.88
LIG1-212ENST00000596549 PPP1R1AQ13522 171 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 LRTM2Q8N967 370 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 DEDD2Q8WXF8 326 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 CSTL1Q9H114 145 aa9.56□□□□□ -0.88
LIG1-212ENST00000596549 IGKV1D-37A0A075B6S9 117 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 MPTX1A8MV57 137 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 JTBO76095 146 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 CA1P00915 261 aaPredicted RBP9.55□□□□□ -0.88
LIG1-212ENST00000596549 HNRNPCP07910 306 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIG1-212ENST00000596549 ZNF688P0C7X2 276 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 ETFRF1Q6IPR1 90 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 C16orf54Q6UWD8 224 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 OR1S1Q8NH92 325 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 Q8WTZ3 238 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 GRAMD2BQ96HH9 432 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 SLC25A21Q9BQT8 299 aaPredicted RBP9.55□□□□□ -0.88
LIG1-212ENST00000596549 CACFD1Q9UGQ2 172 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 U3KQ87 197 aa9.55□□□□□ -0.88
LIG1-212ENST00000596549 SFT2D2O95562 160 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 IAPPP10997 89 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 PSG1P11464 419 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 ATF4P18848 351 aaPredicted RBP9.54□□□□□ -0.88
LIG1-212ENST00000596549 C4BPBP20851 252 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 BAK1Q16611 211 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 TRPT1Q86TN4 253 aaKnown RBP9.54□□□□□ -0.88
LIG1-212ENST00000596549 NOXA1Q86UR1 476 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 CENPSQ8N2Z9 138 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 GATAD1Q8WUU5 269 aa9.54□□□□□ -0.88
LIG1-212ENST00000596549 SDHCQ99643 169 aaPredicted RBP9.54□□□□□ -0.88
LIG1-212ENST00000596549 EPPK1P58107 5090 aaKnown RBP9.54□□□□□ -0.88
LIG1-212ENST00000596549 CXorf65A6NEN9 183 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 NUPR2A6NF83 97 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 KNCNA6PVL3 124 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 PRSS46E5RG02 174 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 BUB3O43684 328 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 GIG44P09565 113 aaPredicted RBP9.53□□□□□ -0.88
LIG1-212ENST00000596549 SLC25A6P12236 298 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 BTCP35070 178 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 GAMTQ14353 236 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 OR51G1Q8NGK1 321 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 LINC00476Q8WZB0 136 aa9.53□□□□□ -0.88
LIG1-212ENST00000596549 NARS2Q96I59 477 aaKnown RBP9.53□□□□□ -0.88
LIG1-212ENST00000596549 IGKV1OR2-108A0A075B7D4 117 aa9.52□□□□□ -0.89
LIG1-212ENST00000596549 IFNA4P05014 189 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms