RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 H1FXQ92522 213 aaKnown RBP10.21□□□□□ -0.78
LIG1-207ENST00000594759 MGST2Q99735 147 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 MBNL3Q9NUK0 354 aaKnown RBP10.21□□□□□ -0.78
LIG1-207ENST00000594759 SLC25A10Q9UBX3 287 aaPredicted RBP10.21□□□□□ -0.78
LIG1-207ENST00000594759 IGHV1-24A0A0C4DH33 117 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 hADV38S2A0JD32 116 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 TMEM262E9PQX1 116 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 KLRC4-KLRK1H3BQV0 150 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 OR4F17Q8NGA8 305 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 SAP25Q8TEE9 199 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 TMEM160Q9NX00 188 aa10.21□□□□□ -0.78
LIG1-207ENST00000594759 A0A0C4DFX4 3053 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 IGKV1-6A0A0C4DH72 117 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 IGKV1-39P01597 117 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 CLPSP04118 112 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 IGKV1D-39P04432 117 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 SP9P0CG40 484 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 SRSF8Q9BRL6 282 aaKnown RBP10.2□□□□□ -0.78
LIG1-207ENST00000594759 SLC25A33Q9BSK2 321 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 PSMG4Q5JS54 123 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 ARPC1AQ92747 370 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 GPR82Q96P67 336 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 PRNDQ9UKY0 176 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 UFC1Q9Y3C8 167 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 THADAQ6YHU6 1953 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 COL4A4P53420 1690 aaPredicted RBP10.2□□□□□ -0.78
LIG1-207ENST00000594759 ENSAO43768 121 aaKnown RBP10.2□□□□□ -0.78
LIG1-207ENST00000594759 PSG7Q13046 419 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 ZNF766Q5HY98 468 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 SH2D6Q7Z4S9 175 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 FER1L5A0AVI2 2057 aa10.2□□□□□ -0.78
LIG1-207ENST00000594759 NTF4P34130 210 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 MZT1Q08AG7 82 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 PLGLAQ15195 96 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 Q6ZS49 121 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 H3BMG7 143 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 DNPH1O43598 174 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 ODF3L1Q8IXM7 274 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 PKIBQ9C010 78 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 TRAV8-2A0A0B4J237 113 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 PRSS57Q6UWY2 283 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 TMEM54Q969K7 222 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 IFI27L1Q96BM0 104 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 PRELID3AQ96N28 172 aa10.19□□□□□ -0.78
LIG1-207ENST00000594759 IGKV3D-11A0A0A0MRZ8 115 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 C15orf62A8K5M9 175 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 RPL7P18124 248 aaKnown RBP10.18□□□□□ -0.78
LIG1-207ENST00000594759 CD24P25063 80 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 RNFT1Q5M7Z0 435 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 LINC00479Q96M42 142 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 MRPL32Q9BYC8 188 aaKnown RBP10.18□□□□□ -0.78
LIG1-207ENST00000594759 TNRC6AQ8NDV7 1962 aaKnown RBP10.18□□□□□ -0.78
LIG1-207ENST00000594759 H3BTX0 84 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 TRAV24A0A0B4J272 114 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 SMIM27A0A1W2PRY6 76 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 VSTM5A8MXK1 200 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 REG1BP48304 166 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 TWIST1Q15672 202 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 ASCL4Q6XD76 172 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 SCRT2Q9NQ03 307 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 PCNX3Q9H6A9 2034 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 EMP1P54849 157 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 DEFB109BQ30KR1 87 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 LINC00173Q6ZV60 143 aa10.18□□□□□ -0.78
LIG1-207ENST00000594759 SPAARA0A1B0GVQ0 90 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 TMEM178AQ8NBL3 297 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 YLPM1P49750 1951 aaKnown RBP10.17□□□□□ -0.78
LIG1-207ENST00000594759 C12orf77C9JDV5 145 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 NKX2-8O15522 239 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 IGLV3-19P01714 112 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 GNG5P63218 68 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 CFHR1Q03591 330 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 WFDC2Q14508 124 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 SPATA12Q7Z6I5 190 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 PRDM14Q9GZV8 571 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 MED13LQ71F56 2210 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 HBDP02042 147 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 LINC00310P59036 64 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 RPL30P62888 115 aaKnown RBP10.17□□□□□ -0.78
LIG1-207ENST00000594759 AMTNQ6UX39 209 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 BOD1L2Q8IYS8 172 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 KIR3DL3Q8N743 410 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 FZR1Q9UM11 496 aa10.17□□□□□ -0.78
LIG1-207ENST00000594759 ABCA4P78363 2273 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 DOCK10Q96BY6 2186 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 TGFAP01135 160 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 KIR2DL2P43627 348 aaPredicted RBP10.16□□□□□ -0.78
LIG1-207ENST00000594759 HERV-K104P63124 156 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 FAM222BQ8WU58 562 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 MUC6Q6W4X9 2439 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 OR11H12B2RN74 326 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 TRIP6Q15654 476 aaKnown RBP10.16□□□□□ -0.78
LIG1-207ENST00000594759 C20orf204Q6ZNR8 217 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 WDR31Q8NA23 367 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 OR11H1Q8NG94 326 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 OR11H2Q8NH07 326 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 C11orf52Q96A22 123 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 PCNX2A6NKB5 2137 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 ATP5G2Q06055 141 aa10.16□□□□□ -0.78
LIG1-207ENST00000594759 ANXA2RQ3ZCQ2 193 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms