RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 NPPCP23582 126 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 TSPOP30536 169 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 SRD5A2P31213 254 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 OPRK1P41145 380 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 GABRA2P47869 451 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ATP5G3P48201 142 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 TFPI2P48307 235 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 AMTP48728 403 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 DSCR4P56555 118 aaPredicted RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 BPIFB3P59826 476 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 KRTDAPP60985 99 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 RPP30P78346 268 aaKnown RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF90Q03938 601 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 CATR1Q13166 79 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 CEACAM21Q3KPI0 293 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF718Q3SXZ3 478 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF585BQ52M93 769 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 LRRC10Q5BKY1 277 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 FAM162BQ5T6X4 162 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 STUMQ69YW2 141 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 Q6ZRM9 215 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 COLCA1Q6ZS62 124 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 TCF23Q7RTU1 214 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 Q8IYB0 196 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 BCL6BQ8N143 479 aaPredicted RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF645Q8N7E2 425 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 STPG4Q8N801 248 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 ZNF114Q8NC26 417 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 OR4C5Q8NGB2 326 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 OR10P1Q8NGE3 313 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 OR1K1Q8NGR3 316 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 WIPF2Q8TF74 440 aaPredicted RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 PIGCQ92535 297 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 RDH5Q92781 318 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 SMIM12Q96EX1 92 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 UHRF2Q96PU4 802 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 PKIBQ9C010 78 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 COMMD5Q9GZQ3 224 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 GP6Q9HCN6 339 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 NRN1Q9NPD7 142 aa3.37□□□□□ -1.87
LIG3-211ENST00000588713 CHTOPQ9Y3Y2 248 aaKnown RBP3.37□□□□□ -1.87
LIG3-211ENST00000588713 TRBV20OR9-2A0A075B6H5 130 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TRAV9-2A0A087WT02 112 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 IGLC7A0M8Q6 106 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ODAMA1E959 279 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 LRRC30A6NM36 301 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 HSBP1L1C9JCN9 74 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 FNDC10F2Z333 226 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 J3QT63 122 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 FCN1O00602 326 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 NDUFB4O95168 129 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 IGLV2-14P01704 120 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 CRYAAP02489 173 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 PF4P02776 101 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 C3orf79P0CE67 100 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 RAC2P15153 192 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 PMCHP20382 165 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ARR3P36575 388 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 THBS3P49746 956 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 PRRX1P54821 245 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ARF6P62330 175 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 CX3CL1P78423 397 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 PSG4Q00888 419 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 EIF4EBP1Q13541 118 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 MMDQ15546 238 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 RTL8BQ17RB0 113 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TDRG1Q3Y452 100 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ZNF497Q6ZNH5 498 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TMEM136Q6ZRR5 245 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 FAM214BQ7L5A3 538 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TCF24Q7RTU0 167 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 MRPL21Q7Z2W9 205 aaKnown RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 NIT1Q86X76 327 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 MED12LQ86YW9 2145 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 MMD2Q8IY49 270 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 DRAM1Q8N682 238 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 Q8N7P7 452 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ZIC4Q8N9L1 334 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 OR5T1Q8NG75 326 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 OR5A2Q8NGI9 324 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TMEM45BQ96B21 275 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 BORCS7Q96B45 105 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 EAF1Q96JC9 268 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 ALKBH3Q96Q83 286 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 FOXB1Q99853 325 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ASCL2Q99929 193 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 DERL1Q9BUN8 251 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 QTRT1Q9BXR0 403 aaKnown RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 KRTAP4-11Q9BYQ6 195 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 FGF23Q9GZV9 251 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 SAP30LQ9HAJ7 183 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 GNB4Q9HAV0 340 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 ST20Q9HBF5 79 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TUBG2Q9NRH3 451 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 OSTCQ9NRP0 149 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 OR1A1Q9P1Q5 309 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 SLC25A10Q9UBX3 287 aaPredicted RBP3.36□□□□□ -1.87
LIG3-211ENST00000588713 CLN8Q9UBY8 286 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 CHCHD2Q9Y6H1 151 aaPredicted RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms