RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 VBP1P61758 197 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 NUTF2P61970 127 aaKnown RBP8.55□□□□□ -1.04
LIG3-209ENST00000586435 SP6Q3SY56 376 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 PSMG4Q5JS54 123 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 PRSS54Q6PEW0 395 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 Q6ZRM9 215 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 OR13C8Q8NGS7 320 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 OR52I2Q8NH67 350 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 TERB2Q8NHR7 220 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 RNASE11Q8TAA1 199 aaKnown RBP8.55□□□□□ -1.04
LIG3-209ENST00000586435 RNASEH2CQ8TDP1 164 aaKnown RBP8.55□□□□□ -1.04
LIG3-209ENST00000586435 Q8WTZ3 238 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 RAB40CQ96S21 281 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 TMEM222Q9H0R3 208 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.55□□□□□ -1.04
LIG3-209ENST00000586435 CLEC5AQ9NY25 188 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 CELA1Q9UNI1 258 aa8.55□□□□□ -1.04
LIG3-209ENST00000586435 MUC4Q99102 2169 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 DEFB131BA0A096LNP1 70 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM25AB3EWG3 89 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM25CB3EWG5 89 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM25GB3EWG6 89 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM90A26D6RGX4 464 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 GSTZ1O43708 216 aaPredicted RBP8.54□□□□□ -1.04
LIG3-209ENST00000586435 P0DMU3 169 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM231AP0DMU4 169 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 FAM231CP0DMU5 169 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 OR10J1P30954 320 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 RND2P52198 227 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 TAS2R19P59542 299 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 SNRPD3P62318 126 aaKnown RBP8.54□□□□□ -1.04
LIG3-209ENST00000586435 C12orf74Q32Q52 190 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 RNASE12Q5GAN4 147 aaKnown RBP8.54□□□□□ -1.04
LIG3-209ENST00000586435 MZT2AQ6P582 158 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 TMEM229BQ8NBD8 167 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 SLC24A4Q8NFF2 622 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 OR4D10Q8NGI6 311 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 C15orf40Q8WUR7 153 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 AP3S1Q92572 193 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 RBPMSQ93062 196 aaKnown RBP8.54□□□□□ -1.04
LIG3-209ENST00000586435 ABHD1Q96SE0 405 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 NRN1Q9NPD7 142 aa8.54□□□□□ -1.04
LIG3-209ENST00000586435 H3BMM0 161 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 BUB3O43684 328 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 OR5AC1P0C628 307 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 DHODHQ02127 395 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 SSBP1Q04837 148 aaKnown RBP8.53□□□□□ -1.04
LIG3-209ENST00000586435 SURF2Q15527 256 aaPredicted RBP8.53□□□□□ -1.04
LIG3-209ENST00000586435 USF2Q15853 346 aaPredicted RBP8.53□□□□□ -1.04
LIG3-209ENST00000586435 ETFRF1Q6IPR1 90 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 POM121L12Q8N7R1 296 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 LHFPL5Q8TAF8 219 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 MARCH1Q8TCQ1 289 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 GLYATL2Q8WU03 294 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 NEU1Q99519 415 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 NDUFAF3Q9BU61 184 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 HEYLQ9NQ87 328 aaPredicted RBP8.53□□□□□ -1.04
LIG3-209ENST00000586435 EXTL2Q9UBQ6 330 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 CACFD1Q9UGQ2 172 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 PCLOQ9Y6V0 5065 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 FAT2Q9NYQ8 4349 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 PKHD1P08F94 4074 aa8.53□□□□□ -1.04
LIG3-209ENST00000586435 TEX13DA0A0J9YY54 714 aaPredicted RBP8.52□□□□□ -1.05
LIG3-209ENST00000586435 RAB3DO95716 219 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 TOMM40O96008 361 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 IL4P05112 153 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 HLA-DRB4P13762 266 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 NPY1RP25929 384 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 SCGB2B2Q4G0G5 96 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 STEAP1BQ6NZ63 245 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 SIGLEC15Q6ZMC9 328 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 ZNF705AQ6ZN79 300 aaPredicted RBP8.52□□□□□ -1.05
LIG3-209ENST00000586435 NOXA1Q86UR1 476 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 TMEM170AQ8WVE7 144 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 NAA60Q9H7X0 242 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 CACNG5Q9UF02 275 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 C14orf166Q9Y224 244 aaKnown RBP8.52□□□□□ -1.05
LIG3-209ENST00000586435 HLA-DRB4X5D2U9 266 aa8.52□□□□□ -1.05
LIG3-209ENST00000586435 TMEM189A5PLL7 270 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 SMIM9A6NGZ8 99 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 ZNF705FA8MVS1 300 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 GABARAPH6UMI1 98 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 GABARAPO95166 117 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 ZNF705DP0CH99 300 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 ZNF705BP0CI00 300 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 MED14OSP0DP75 135 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 ZNF182P17025 639 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 NUP62P37198 522 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 NKX2-1P43699 371 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 MRPS10P82664 201 aaKnown RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 MEF2DQ14814 521 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 GPR107Q5VW38 600 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 SELENOHQ8IZQ5 122 aaKnown RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 GPR146Q96CH1 333 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 RTBDNQ9BSG5 229 aaPredicted RBP8.51□□□□□ -1.05
LIG3-209ENST00000586435 XCL2Q9UBD3 114 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 DNAH2Q9P225 4427 aa8.51□□□□□ -1.05
LIG3-209ENST00000586435 TEX48A0A1B0GUV7 120 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 CRYM-AS1A6NIL9 109 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 CEBPZOSA8MTT3 80 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms