RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TNFRSF19Q9NS68 423 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 PITPNC1Q9UKF7 332 aa8.27□□□□□ -1.09
SS18-217ENST00000580958 LOC102723971A0A1B0GUV8 181 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 A0A1W2PPV4 95 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 TMEM218A2RU14 115 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 RBFOX3A6NFN3 312 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 G3V318 75 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 OR2J3O76001 311 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 NDUFB8O95169 186 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 IGHV4-59P01825 116 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 RHOBP62745 196 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 DEFA5Q01523 94 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 ZNF90Q03938 601 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 ICAM4Q14773 271 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 TIGITQ495A1 244 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 ZNF506Q5JVG8 444 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 C9orf139Q6ZV77 190 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 C16orf82Q7Z2V1 217 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 TMEM116Q8NCL8 245 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 OR4X1Q8NH49 305 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 TRGV9Q99603 122 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 GNG13Q9P2W3 67 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 S4R3C0 116 aa8.26□□□□□ -1.09
SS18-217ENST00000580958 IFNA1P01562 189 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 STAG3L2P0CL84 134 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 STAG3L3P0CL85 134 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 ADCYAP1P18509 176 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 SELENOTP62341 195 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 IL17RELQ6ZVW7 336 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 MIR17HGQ75NE6 70 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 IQCF2Q8IXL9 164 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 RXFP4Q8TDU9 374 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 ZNF48Q96MX3 618 aaPredicted RBP8.25□□□□□ -1.09
SS18-217ENST00000580958 DOK5Q9P104 306 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 MYO9AB2RTY4 2548 aa8.25□□□□□ -1.09
SS18-217ENST00000580958 TRAV41A0A0B4J266 112 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 PSMB11A5LHX3 300 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 F8W036 122 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 M0QZK8 103 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 COX7A2P2O60397 106 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 CLN5O75503 358 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 OR5G3P0C626 314 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 SFTA3P0C7M3 94 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 IGLC1P0CG04 106 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 BCL2P10415 239 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 HIST1H1BP16401 226 aaKnown RBP8.24□□□□□ -1.09
SS18-217ENST00000580958 IER3P46695 156 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 PPT1P50897 306 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 CRIP2P52943 208 aaPredicted RBP8.24□□□□□ -1.09
SS18-217ENST00000580958 MFAP4P55083 255 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 KRTAP1-1Q07627 177 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 AKIRIN2Q53H80 203 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 FAM78BQ5VT40 261 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 Q6YL49 198 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 SPNS3Q6ZMD2 512 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 SLC35E3Q7Z769 313 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 OR1L4Q8NGR5 311 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 OR5R1Q8NH85 324 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 GATAD1Q8WUU5 269 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 TMEM37Q8WXS4 190 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 TMEM68Q96MH6 324 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 SEPSECSQ9HD40 501 aaKnown RBP8.24□□□□□ -1.09
SS18-217ENST00000580958 ZNF355PQ9NSJ1 428 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 THYN1Q9P016 225 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 LINC00527Q9UJ94 153 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 FBXL7Q9UJT9 491 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 FUT9Q9Y231 359 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 ACANP16112 2415 aa8.24□□□□□ -1.09
SS18-217ENST00000580958 CD5LO43866 347 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 IGHV3-23P01764 117 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 IGHG2P01859 326 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 APOC3P02656 99 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 SRP19P09132 144 aaKnown RBP8.23□□□□□ -1.09
SS18-217ENST00000580958 ARL14EPLP0DKL9 152 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 BLCAPP62952 87 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 PMS2P11Q13670 270 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 KLK9Q2XQG4 91 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 Q56UQ5 140 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 KHDC3LQ587J8 217 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 C19orf54Q5BKX5 351 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 C10orf91Q5T1B1 145 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 PATE2Q6UY27 113 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 Q6ZS46 218 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 RNF2Q99496 336 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 SMDT1Q9H4I9 107 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 C21orf62Q9NYP8 219 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 KLK9Q9UKQ9 250 aa8.23□□□□□ -1.09
SS18-217ENST00000580958 SONP18583 2426 aaKnown RBP8.23□□□□□ -1.09
SS18-217ENST00000580958 CXorf1O96002 111 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 IGKV1-17P01599 117 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 GCHFRP30047 84 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 NPBWR1P48145 328 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 RHOGP84095 191 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 C10orf113Q5VZT2 155 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 RBMS3Q6XE24 437 aaKnown RBP8.22□□□□□ -1.09
SS18-217ENST00000580958 TEX29Q8N6K0 151 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 SIGLECL1Q8N7X8 197 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 MS4A10Q96PG2 267 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 PFDN5Q99471 154 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 C19orf24Q9BVV8 132 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms