RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TCF24Q7RTU0 167 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 OR1S2Q8NGQ3 325 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 VSIRQ9H7M9 311 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 TMED3Q9Y3Q3 217 aa17.79■□□□□ 0.44
SHMT1-206ENST00000579558 IGHV3-66A0A0C4DH42 116 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 HOXB5P09067 269 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 IGLC1P0CG04 106 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 NPPCP23582 126 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 OR10J1P30954 320 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 TFPI2P48307 235 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 FAM90A2PQ658T7 463 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 FAM110AQ9BQ89 295 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 C7orf50Q9BRJ6 194 aaKnown RBP17.78■□□□□ 0.44
SHMT1-206ENST00000579558 FLVCR2Q9UPI3 526 aa17.78■□□□□ 0.44
SHMT1-206ENST00000579558 CD5P06127 495 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 GBGT1Q8N5D6 347 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 NPIPB3Q92617 1050 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 ACY3Q96HD9 319 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 METTL26Q96S19 204 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 TMEM231Q9H6L2 316 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 EDA2RQ9HAV5 297 aa17.77■□□□□ 0.44
SHMT1-206ENST00000579558 C9orf170A2RU37 121 aa17.76■□□□□ 0.43
SHMT1-206ENST00000579558 IFNA4P05014 189 aa17.76■□□□□ 0.43
SHMT1-206ENST00000579558 BTCP35070 178 aa17.76■□□□□ 0.43
SHMT1-206ENST00000579558 ATP5IP56385 69 aaPredicted RBP17.76■□□□□ 0.43
SHMT1-206ENST00000579558 PAFAH1B2P68402 229 aa17.76■□□□□ 0.43
SHMT1-206ENST00000579558 LILRB2Q8N423 598 aa17.76■□□□□ 0.43
SHMT1-206ENST00000579558 A0A1W2PS18 150 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 FAM90A26D6RGX4 464 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 DFFBO76075 338 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 IAPPP10997 89 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 YPEL3P61236 119 aaPredicted RBP17.75■□□□□ 0.43
SHMT1-206ENST00000579558 GGNBP1Q5YKI7 109 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 Q8WTZ3 238 aa17.75■□□□□ 0.43
SHMT1-206ENST00000579558 MED6O75586 246 aa17.74■□□□□ 0.43
SHMT1-206ENST00000579558 CRYBB3P26998 211 aa17.74■□□□□ 0.43
SHMT1-206ENST00000579558 RPL11P62913 178 aaKnown RBP17.74■□□□□ 0.43
SHMT1-206ENST00000579558 NARS2Q96I59 477 aaKnown RBP17.74■□□□□ 0.43
SHMT1-206ENST00000579558 OR4E1P0C645 316 aa17.73■□□□□ 0.43
SHMT1-206ENST00000579558 LYL1P12980 280 aa17.73■□□□□ 0.43
SHMT1-206ENST00000579558 CMC4P56277 68 aaPredicted RBP17.73■□□□□ 0.43
SHMT1-206ENST00000579558 WFDC3Q8IUB2 231 aa17.73■□□□□ 0.43
SHMT1-206ENST00000579558 COQ8AQ8NI60 647 aa17.73■□□□□ 0.43
SHMT1-206ENST00000579558 DNASE2O00115 360 aaPredicted RBP17.72■□□□□ 0.43
SHMT1-206ENST00000579558 ANXA7P20073 488 aaKnown RBP17.72■□□□□ 0.43
SHMT1-206ENST00000579558 APOC4P55056 127 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 DHRS2Q13268 280 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 LYG2Q86SG7 212 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 APRG1Q8IVJ8 170 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 MAGT1Q9H0U3 335 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 MS4A6AQ9H2W1 248 aa17.72■□□□□ 0.43
SHMT1-206ENST00000579558 PAIP2BQ9ULR5 123 aaKnown RBP17.72■□□□□ 0.43
SHMT1-206ENST00000579558 ADAP1O75689 374 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 GPX4P36969 197 aaPredicted RBP17.71■□□□□ 0.43
SHMT1-206ENST00000579558 P2RY1P47900 373 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 RAB11AP62491 216 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 C4orf46Q504U0 113 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 CASC10Q5T4H9 136 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 GRAMD2BQ96HH9 432 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 SLC35E1Q96K37 410 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 CIB3Q96Q77 187 aaPredicted RBP17.71■□□□□ 0.43
SHMT1-206ENST00000579558 MAP6D1Q9H9H5 199 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 DNAH7Q8WXX0 4024 aa17.71■□□□□ 0.43
SHMT1-206ENST00000579558 PLA2G10O15496 165 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 SYNGR2O43760 224 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 TOMM40O96008 361 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 IL4P05112 153 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 RD3LP0DJH9 198 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 RPL35AP18077 110 aaKnown RBP17.7■□□□□ 0.42
SHMT1-206ENST00000579558 CNPY1Q3B7I2 92 aa17.7■□□□□ 0.42
SHMT1-206ENST00000579558 TRAV2A0A0B4J234 112 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 WRBO00258 174 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 LYRM1O43325 122 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 HNRNPCP07910 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT1-206ENST00000579558 RPP30P78346 268 aaKnown RBP17.69■□□□□ 0.42
SHMT1-206ENST00000579558 GAMTQ14353 236 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 ZNF124Q15973 351 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 RABAC1Q9UI14 185 aa17.69■□□□□ 0.42
SHMT1-206ENST00000579558 IFNA21P01568 189 aa17.68■□□□□ 0.42
SHMT1-206ENST00000579558 USF2Q15853 346 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-206ENST00000579558 ZFAND6Q6FIF0 208 aa17.68■□□□□ 0.42
SHMT1-206ENST00000579558 STXBP6Q8NFX7 210 aa17.68■□□□□ 0.42
SHMT1-206ENST00000579558 OVOL2Q9BRP0 275 aa17.68■□□□□ 0.42
SHMT1-206ENST00000579558 U3KQE9 123 aa17.68■□□□□ 0.42
SHMT1-206ENST00000579558 KIR2DL5BA0A0G2JN68 375 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 KIR2DL5BA0A0G2JPC4 375 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 ZFP92A6NM28 416 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 MPTX1A8MV57 137 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 UBE2CO00762 179 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 PSG1P11464 419 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 KIR2DL5AQ8N109 375 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 STPG3Q8N7X2 389 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 KIR2DL5BQ8NHK3 375 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 CCDC32Q9BV29 185 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 C20orf85Q9H1P6 137 aa17.67■□□□□ 0.42
SHMT1-206ENST00000579558 Q6ZWC4 215 aa17.66■□□□□ 0.42
SHMT1-206ENST00000579558 EIF2B2P49770 351 aaKnown RBP17.65■□□□□ 0.42
SHMT1-206ENST00000579558 DEFB131AP59861 70 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 DEFB135Q30KP9 77 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 SPANXN5Q5MJ07 72 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms