RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SELENOHQ8IZQ5 122 aaKnown RBP10.03□□□□□ -0.8
CCDC40-216ENST00000576241 FAM24BQ8N5W8 94 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 SLC24A4Q8NFF2 622 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 OR4C16Q8NGL9 310 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 LHFPL5Q8TAF8 219 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 C11orf45Q8TAV5 145 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 RNASEH2CQ8TDP1 164 aaKnown RBP10.03□□□□□ -0.8
CCDC40-216ENST00000576241 DIRAS2Q96HU8 199 aa10.03□□□□□ -0.8
CCDC40-216ENST00000576241 CTDSPLO15194 276 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 IFNA4P05014 189 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 ALDH3B2P48448 385 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 RND2P52198 227 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 RBMS2Q15434 407 aaKnown RBP10.02□□□□□ -0.81
CCDC40-216ENST00000576241 C2orf83Q53S99 150 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 NOXA1Q86UR1 476 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 CLVS1Q8IUQ0 354 aaPredicted RBP10.02□□□□□ -0.81
CCDC40-216ENST00000576241 OR1S2Q8NGQ3 325 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 Q8WTZ3 238 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 RAB2BQ8WUD1 216 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 GPR146Q96CH1 333 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 FBXL17Q9UF56 701 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 KCNIP3Q9Y2W7 256 aa10.02□□□□□ -0.81
CCDC40-216ENST00000576241 K7EQG2 157 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 ZNF688P0C7X2 276 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 IGLC1P0CG04 106 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 OR10J1P30954 320 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 NANOS2P60321 138 aaKnown RBP10.01□□□□□ -0.81
CCDC40-216ENST00000576241 TMEM41BQ5BJD5 291 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 ETFRF1Q6IPR1 90 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 OR51S1Q8NGJ8 323 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 SCGB3A2Q96PL1 93 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 CCDC59Q9P031 241 aaKnown RBP10.01□□□□□ -0.81
CCDC40-216ENST00000576241 RSL24D1Q9UHA3 163 aaKnown RBP10.01□□□□□ -0.81
CCDC40-216ENST00000576241 SCP2D1Q9UJQ7 156 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 GPR132Q9UNW8 380 aa10.01□□□□□ -0.81
CCDC40-216ENST00000576241 HELTA6NFD8 242 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 NOL3O60936 208 aaKnown RBP10□□□□□ -0.81
CCDC40-216ENST00000576241 NXPH3O95157 252 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 HNRNPCP07910 306 aaKnown RBP eCLIP10□□□□□ -0.81
CCDC40-216ENST00000576241 SULT1A3P0DMM9 295 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 SULT1A4P0DMN0 295 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 SPP1P10451 314 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 NPY1RP25929 384 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 YPEL3P61236 119 aaPredicted RBP10□□□□□ -0.81
CCDC40-216ENST00000576241 PRSS54Q6PEW0 395 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 MORN3Q6PF18 240 aaPredicted RBP10□□□□□ -0.81
CCDC40-216ENST00000576241 IL22RA2Q969J5 263 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 BCL7BQ9BQE9 202 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 TMEM56-RWDD3S4R434 201 aa10□□□□□ -0.81
CCDC40-216ENST00000576241 ANKRD20A5PA0PJZ0 165 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 DEFB4AO15263 64 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 GSTZ1O43708 216 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-216ENST00000576241 IFNA10P01566 189 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 AP2S1P53680 142 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-216ENST00000576241 TMBIM6P55061 237 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 DHRS2Q13268 280 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 NMSQ5H8A3 153 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 ACTL10Q5JWF8 245 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 TRPT1Q86TN4 253 aaKnown RBP9.99□□□□□ -0.81
CCDC40-216ENST00000576241 DYNC2LI1Q8TCX1 351 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 DCANP1Q8TF63 244 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 ACY3Q96HD9 319 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 MCUBQ9NWR8 336 aa9.99□□□□□ -0.81
CCDC40-216ENST00000576241 KNCNA6PVL3 124 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 IL4P05112 153 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 CCR6P51684 374 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 LGALS9CQ6DKI2 356 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 C2CD4CQ8TF44 421 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 GLMPQ8WWB7 406 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 NPIPB3Q92617 1050 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 PRR13Q9NZ81 148 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 U3KQ87 197 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 U3KQE9 123 aa9.98□□□□□ -0.81
CCDC40-216ENST00000576241 A0A0B4J2A0 478 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 PIGBOS1A0A0B4J2F0 54 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 RD3LP0DJH9 198 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 ANXA3P12429 323 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 AKR1C4P17516 323 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 SNRPD3P62318 126 aaKnown RBP9.97□□□□□ -0.81
CCDC40-216ENST00000576241 SRPXP78539 464 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 SMCO1Q147U7 214 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 USF2Q15853 346 aaPredicted RBP9.97□□□□□ -0.81
CCDC40-216ENST00000576241 PSMG4Q5JS54 123 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 C16orf54Q6UWD8 224 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 CENPSQ8N2Z9 138 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 Q8NAQ8 132 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 DTD1Q8TEA8 209 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 TMEM170AQ8WVE7 144 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 KRTAP4-5Q9BYR2 181 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 SHPKQ9UHJ6 478 aa9.97□□□□□ -0.81
CCDC40-216ENST00000576241 IGHV4-28A0A0C4DH34 117 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 FABP12A6NFH5 140 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 TOMM40O96008 361 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 MIFP14174 115 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 C4BPBP20851 252 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 FAUP35544 74 aaKnown RBP9.96□□□□□ -0.82
CCDC40-216ENST00000576241 NUP62P37198 522 aaPredicted RBP9.96□□□□□ -0.82
CCDC40-216ENST00000576241 TCTAP57738 103 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 LGI3Q8N145 548 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms