RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 S100A13Q99584 98 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 CMSS1Q9BQ75 279 aaKnown RBP5.4□□□□□ -1.55
VPS53-217ENST00000575100 TM2D1Q9BX74 207 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 SNHG12Q9BXW3 62 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 CST11Q9H112 138 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 RAB22AQ9UL26 194 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 IGLV5-45A0A087WSX0 123 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 MEIS3P1A6NDR6 274 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 TMEM235A6NFC5 223 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 LHBP01229 141 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 CSF3P09919 207 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 FOLR2P14207 255 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 RBM11P57052 281 aaKnown RBP5.39□□□□□ -1.55
VPS53-217ENST00000575100 FGF12P61328 243 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 CLINT1Q14677 625 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 SCGB2B2Q4G0G5 96 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 Q6ZPA2 131 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 MKXQ8IYA7 352 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 SAXO1Q8IYX7 474 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 GAPTQ8N292 157 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 OR51T1Q8NGJ9 327 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 OR10R2Q8NGX6 335 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 LRRC29Q8WV35 223 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 DUX3Q96PT4 197 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 HES4Q9HCC6 221 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 DYNLRB1Q9NP97 96 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 MED9Q9NWA0 146 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 ZANQ9Y493 2812 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 ATRQ13535 2644 aa5.39□□□□□ -1.55
VPS53-217ENST00000575100 IGHV3OR15-7A0A075B7D8 119 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 IGKV1D-8A0A087WSZ0 117 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 FAM240AA0A1B0GVK7 77 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 SRRM5B3KS81 715 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 MFNGO00587 321 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 FCGR3AP08637 254 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 COL8A2P25067 703 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 BLVRBP30043 206 aaPredicted RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 DVL1P1P54792 670 aaPredicted RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 SNRPD2P62316 118 aaKnown RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 GUCA2BQ16661 112 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 TMEM30BQ3MIR4 351 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 PYDC2Q56P42 97 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 LINC01551Q86U37 167 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 S100ZQ8WXG8 99 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 SULT4A1Q9BR01 284 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 HDHD3Q9BSH5 251 aaPredicted RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 FAAP24Q9BTP7 215 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 CBLN4Q9NTU7 201 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 ZNF230Q9UIE0 474 aaPredicted RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 NOP16Q9Y3C1 178 aaKnown RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 IGKV1D-17A0A075B6S4 117 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 C15orf61A6NNL5 157 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 F6UB75 175 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 OR7C1O76099 320 aaPredicted RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 CYB5AP00167 134 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 RBMY1CP0DJD4 496 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 IGHV4-38-2P0DP08 117 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 FAM78BQ5VT40 261 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 Q6P435 159 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 ACP7Q6ZNF0 438 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 Q6ZVH6 145 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 CHST4Q8NCG5 386 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 CCL17Q92583 94 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 ST6GAL2Q96JF0 529 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 LINC00052Q96N35 136 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 FBN1P35555 2871 aaKnown RBP5.38□□□□□ -1.55
VPS53-217ENST00000575100 USF3Q68DE3 2245 aa5.38□□□□□ -1.55
VPS53-217ENST00000575100 STAB1Q9NY15 2570 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 ABCA1O95477 2261 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 C1orf196B1AJZ1 125 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 TNFRSF13BO14836 293 aaPredicted RBP5.37□□□□□ -1.55
VPS53-217ENST00000575100 ORC5O43913 435 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 OR2H2O95918 312 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 IFNA1P01562 189 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 SNRPCP09234 159 aaKnown RBP5.37□□□□□ -1.55
VPS53-217ENST00000575100 PSG2P11465 335 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 HIST1H1DP16402 221 aaKnown RBP5.37□□□□□ -1.55
VPS53-217ENST00000575100 RAB5CP51148 216 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 ZNF146Q15072 292 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 ECSCRQ19T08 205 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 IZUMO4Q1ZYL8 232 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 TMEM128Q5BJH2 165 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 NHLRC3Q5JS37 347 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 TEX261Q6UWH6 196 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 DNM1P46Q6ZS02 220 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 CD177Q8N6Q3 437 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 ZNF491Q8N8L2 437 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 DEFB108BQ8NET1 73 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 ORAOV1Q8WV07 137 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 SMIM4Q8WVI0 70 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 RDH5Q92781 318 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 MRPS24Q96EL2 167 aaKnown RBP5.37□□□□□ -1.55
VPS53-217ENST00000575100 PRO0628Q9UI54 55 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 DYSFO75923 2080 aa5.37□□□□□ -1.55
VPS53-217ENST00000575100 SONP18583 2426 aaKnown RBP5.37□□□□□ -1.55
VPS53-217ENST00000575100 IGHV1-69-2A0A0G2JMI3 117 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 SLC17A3O00476 420 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 CCL25O15444 150 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 CD5LO43866 347 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 UPK1BO75841 260 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms