RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 AKR1C1Q04828 323 aa13.11□□□□□ -0.31
NUP88-210ENST00000574867 ARL16Q0P5N6 197 aa13.11□□□□□ -0.31
NUP88-210ENST00000574867 GPHB5Q86YW7 130 aa13.11□□□□□ -0.31
NUP88-210ENST00000574867 LILRB2Q8N423 598 aa13.11□□□□□ -0.31
NUP88-210ENST00000574867 TMEM217Q8N7C4 229 aa13.11□□□□□ -0.31
NUP88-210ENST00000574867 OR2C1O95371 312 aa13.1□□□□□ -0.31
NUP88-210ENST00000574867 RPL12P30050 165 aaKnown RBP13.1□□□□□ -0.31
NUP88-210ENST00000574867 KLF5Q13887 457 aaPredicted RBP13.1□□□□□ -0.31
NUP88-210ENST00000574867 FAM106AQ4KMX7 169 aa13.1□□□□□ -0.31
NUP88-210ENST00000574867 Q5BKY6 102 aa13.1□□□□□ -0.31
NUP88-210ENST00000574867 SMCO3A2RU48 225 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 TMEM144Q7Z5S9 345 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 DLX4Q92988 240 aaPredicted RBP13.09□□□□□ -0.31
NUP88-210ENST00000574867 A0A1B0GVG6 124 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 G3V3Q6 166 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 NDUFA4O00483 81 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 IGKV1-17P01599 117 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 NUP62P37198 522 aaPredicted RBP13.09□□□□□ -0.31
NUP88-210ENST00000574867 ATP6V1FQ16864 119 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 ZNF600Q6ZNG1 722 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 REC114Q7Z4M0 266 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 THAP8Q8NA92 274 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 NPVFQ9HCQ7 196 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 HSPB11Q9Y547 144 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 WNK1Q9H4A3 2382 aa13.09□□□□□ -0.31
NUP88-210ENST00000574867 ZFP92A6NM28 416 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 LGALS9O00182 355 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 OVOL1O14753 267 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 FABP1P07148 127 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 SYNJ2BPP57105 145 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 YPEL3P61236 119 aaPredicted RBP13.08□□□□□ -0.32
NUP88-210ENST00000574867 NHLH2Q02577 135 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 AKAP14Q86UN6 197 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 WFDC9Q8NEX5 89 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 TMEM147Q9BVK8 224 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 UQCC1Q9NVA1 299 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 FXYD6-FXYD2A0A087WZ82 144 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 CD33P20138 364 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 VWC2Q2TAL6 325 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 TIGITQ495A1 244 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 OR5C1Q8NGR4 320 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 TMEM190Q8WZ59 177 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 ST6GAL2Q96JF0 529 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 AQP10Q96PS8 301 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 TRGV9Q99603 122 aa13.08□□□□□ -0.32
NUP88-210ENST00000574867 A8MWP6 167 aa13.07□□□□□ -0.32
NUP88-210ENST00000574867 ZNF546Q86UE3 836 aa13.07□□□□□ -0.32
NUP88-210ENST00000574867 TCTE3Q8IZS6 198 aa13.07□□□□□ -0.32
NUP88-210ENST00000574867 INO80EQ8NBZ0 244 aaPredicted RBP13.07□□□□□ -0.32
NUP88-210ENST00000574867 PEMTQ9UBM1 199 aa13.07□□□□□ -0.32
NUP88-210ENST00000574867 IGKV1D-37A0A075B6S9 117 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 IGHV3-35A0A0C4DH35 117 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 TEPPQ6URK8 271 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 TREML4Q6UXN2 200 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 OR9G4Q8NGQ1 327 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 TNFSF18Q9UNG2 199 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 IGKV1OR2-108A0A075B7D4 117 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 TOMM40O96008 361 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 RCC1LQ96I51 464 aaKnown RBP13.06□□□□□ -0.32
NUP88-210ENST00000574867 MCRIP2Q9BUT9 160 aaKnown RBP13.06□□□□□ -0.32
NUP88-210ENST00000574867 UFC1Q9Y3C8 167 aa13.06□□□□□ -0.32
NUP88-210ENST00000574867 ZNF320A2RRD8 509 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 SMLR1H3BR10 107 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 Q8WTZ3 238 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 ZNF414Q96IQ9 312 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 LSM4Q9Y4Z0 139 aaKnown RBP13.05□□□□□ -0.32
NUP88-210ENST00000574867 PUS1Q9Y606 427 aaKnown RBP eCLIP13.05□□□□□ -0.32
NUP88-210ENST00000574867 VWFP04275 2813 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 DNHD1Q96M86 4753 aa13.05□□□□□ -0.32
NUP88-210ENST00000574867 DFFBO76075 338 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 YIF1AO95070 293 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 RD3LP0DJH9 198 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 ELLP55199 621 aaPredicted RBP13.04□□□□□ -0.32
NUP88-210ENST00000574867 UNQ9165/PRO28630Q6UXU0 137 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 ATP5SQ99766 215 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 ELOVL1Q9BW60 279 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 DAZ1Q9NQZ3 744 aaKnown RBP13.04□□□□□ -0.32
NUP88-210ENST00000574867 UBE2L5PA0A1B0GUS4 154 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 CLINT1Q14677 625 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 TOMM20LQ6UXN7 152 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 GINS3Q9BRX5 216 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 ZFAND3Q9H8U3 227 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 WDR83OSQ9Y284 106 aa13.04□□□□□ -0.32
NUP88-210ENST00000574867 RNF222A6NCQ9 220 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 CFDP00746 253 aaPredicted RBP13.03□□□□□ -0.32
NUP88-210ENST00000574867 ZNF90Q03938 601 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 RAB31Q13636 194 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 OR51G1Q8NGK1 321 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 FAM210AQ96ND0 272 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 C20orf24Q9BUV8 137 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 K7EMT4 169 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 ARPC5O15511 151 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 MPDU1O75352 247 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 PSG1P11464 419 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 SELENOTP62341 195 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 GPR61Q9BZJ8 451 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 TRRAPQ9Y4A5 3859 aa13.03□□□□□ -0.32
NUP88-210ENST00000574867 HMSDA8MTL9 139 aa13.02□□□□□ -0.33
NUP88-210ENST00000574867 CYP2G1PQ6ZSU1 146 aa13.02□□□□□ -0.33
NUP88-210ENST00000574867 MARC2Q969Z3 335 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms