RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 M0R381 172 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 ZNF56Q15929 161 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 COLCA1Q6ZS62 124 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 NIT1Q86X76 327 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 SVILO95425 2214 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 MPDZO75970 2070 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 ASIPP42127 132 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 LIME1Q9H400 295 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 PSG8Q9UQ74 426 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 ATP5LO75964 103 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 MYOD1P15172 320 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 C10orf91Q5T1B1 145 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 TMEM200BQ69YZ2 307 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 ATP5L2Q7Z4Y8 100 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 RAXQ9Y2V3 346 aa12.64□□□□□ -0.39
CIITA-204ENST00000570546 OR11H12B2RN74 326 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 GFRA3O60609 400 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 PCP4P48539 62 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 OR11H1Q8NG94 326 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 OR11H2Q8NH07 326 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 IGKV1D-17A0A075B6S4 117 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 LYNX1G3V0Z9 82 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 TNFSF13O75888 250 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 LYNX1P0DP58 116 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 ATP5J2P56134 94 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 TMEM256Q8N2U0 113 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 WIPF3A6NGB9 483 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 TSPOP30536 169 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 PROK2Q9HC23 129 aa12.63□□□□□ -0.39
CIITA-204ENST00000570546 CD24P25063 80 aa12.62□□□□□ -0.39
CIITA-204ENST00000570546 SMAGPQ0VAQ4 97 aa12.62□□□□□ -0.39
CIITA-204ENST00000570546 LY96Q9Y6Y9 160 aa12.62□□□□□ -0.39
CIITA-204ENST00000570546 CHCHD1Q96BP2 118 aaKnown RBP12.62□□□□□ -0.39
CIITA-204ENST00000570546 CCL19Q99731 98 aa12.62□□□□□ -0.39
CIITA-204ENST00000570546 TNFRSF14Q92956 283 aa12.62□□□□□ -0.39
CIITA-204ENST00000570546 RNASE6Q93091 150 aaKnown RBP12.62□□□□□ -0.39
CIITA-204ENST00000570546 MED12Q93074 2177 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 TIMM23O14925 209 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 SNRPD3P62318 126 aaKnown RBP12.61□□□□□ -0.39
CIITA-204ENST00000570546 GAFA1Q96PS6 74 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.61□□□□□ -0.39
CIITA-204ENST00000570546 CRXO43186 299 aaPredicted RBP12.61□□□□□ -0.39
CIITA-204ENST00000570546 LEPP41159 167 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 C1orf194Q5T5A4 169 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 ARL6IP6Q8N6S5 226 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 DDB2Q92466 427 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 SCGB3A1Q96QR1 104 aa12.61□□□□□ -0.39
CIITA-204ENST00000570546 MBNL3Q9NUK0 354 aaKnown RBP12.61□□□□□ -0.39
CIITA-204ENST00000570546 FABP5P3A8MUU1 101 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 IGKV3-20P01619 116 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 COX6CP09669 75 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 CSRP1P21291 193 aaKnown RBP12.6□□□□□ -0.39
CIITA-204ENST00000570546 PAX9P55771 341 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 PRSS8Q16651 343 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 SLC25A48Q6ZT89 311 aaKnown RBP12.6□□□□□ -0.39
CIITA-204ENST00000570546 OR5AN1Q8NGI8 311 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 IGHV2-26A0A0B4J1V2 119 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 LY6G6EA0A0G2JKS1 128 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 H0YJW9 148 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 U3KQA8 63 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 TMEM167AQ8TBQ9 72 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 SMIM12Q96EX1 92 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 DUX5Q96PT3 197 aa12.6□□□□□ -0.39
CIITA-204ENST00000570546 IGHV1-8P0DP01 117 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 RSPO1Q2MKA7 263 aaPredicted RBP12.59□□□□□ -0.39
CIITA-204ENST00000570546 FANCMQ8IYD8 2048 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 FAM181BA6NEQ2 426 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 TMEM50AO95807 157 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 COX6B1P14854 86 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 TTC9CQ8N5M4 171 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 PLXNB3Q9ULL4 1909 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 IGHV3OR16-12A0A075B7B8 117 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 RAX2Q96IS3 184 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 TMEM178BH3BS89 294 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 RASL11AQ6T310 242 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 ASXL3Q9C0F0 2248 aa12.59□□□□□ -0.39
CIITA-204ENST00000570546 A6NNC1 897 aa12.58□□□□□ -0.39
CIITA-204ENST00000570546 ASCL2Q99929 193 aa12.58□□□□□ -0.39
CIITA-204ENST00000570546 PPP1R17O96001 155 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 IGHG3P01860 377 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 GZMBP10144 247 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 NEUROG1Q92886 237 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 SLC50A1Q9BRV3 221 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 HBDP02042 147 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 PRSS2P07478 247 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 PSMG4Q5JS54 123 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 UBE2L6O14933 153 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 RNASE4P34096 147 aaKnown RBP12.58□□□□□ -0.4
CIITA-204ENST00000570546 C19orf54Q5BKX5 351 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 PHF3Q92576 2039 aaKnown RBP12.58□□□□□ -0.4
CIITA-204ENST00000570546 TRGV9Q99603 122 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 ALKBH7Q9BT30 221 aaPredicted RBP12.58□□□□□ -0.4
CIITA-204ENST00000570546 CDKN1AP38936 164 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 AMMECR1LQ6DCA0 310 aa12.58□□□□□ -0.4
CIITA-204ENST00000570546 IGLV3-1P01715 115 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 PRB4P10163 310 aaPredicted RBP12.57□□□□□ -0.4
CIITA-204ENST00000570546 PSG1P11464 419 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 TMEM170BQ5T4T1 132 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 NUP37Q8NFH4 326 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 SCRT1Q9BWW7 348 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms