RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 STRAPQ9Y3F4 350 aaKnown RBP9.81□□□□□ -0.84
CLK3-224ENST00000568605 IGHV7-4-1A0A0J9YVY3 117 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 MPTX1A8MV57 137 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 ZNF207O43670 478 aaKnown RBP9.8□□□□□ -0.84
CLK3-224ENST00000568605 SSSCA1O60232 199 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 PRAF2O60831 178 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 IL5P05113 134 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 IGLC1P0CG04 106 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 ID3Q02535 119 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 SPANXN5Q5MJ07 72 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 C11orf87Q6NUJ2 197 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 TOMM20LQ6UXN7 152 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 ZBTB8BQ8NAP8 495 aaPredicted RBP9.8□□□□□ -0.84
CLK3-224ENST00000568605 WDR89Q96FK6 387 aaPredicted RBP9.8□□□□□ -0.84
CLK3-224ENST00000568605 METTL26Q96S19 204 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 RAB40CQ96S21 281 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 SPAG8Q99932 426 aaPredicted RBP9.8□□□□□ -0.84
CLK3-224ENST00000568605 ZFAND3Q9H8U3 227 aa9.8□□□□□ -0.84
CLK3-224ENST00000568605 MRPL36Q9P0J6 103 aaKnown RBP9.8□□□□□ -0.84
CLK3-224ENST00000568605 A0A1W2PS18 150 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 C5orf51A6NDU8 294 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 FAM25EA8MYX2 175 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 H3BP45 60 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 SCAF4O95104 1147 aaKnown RBP9.79□□□□□ -0.84
CLK3-224ENST00000568605 YPEL3P61236 119 aaPredicted RBP9.79□□□□□ -0.84
CLK3-224ENST00000568605 POLR2GP62487 172 aaKnown RBP eCLIP9.79□□□□□ -0.84
CLK3-224ENST00000568605 TIGITQ495A1 244 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 NRARPQ7Z6K4 114 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 Q8WTZ3 238 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 GRAMD2BQ96HH9 432 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 NEURL2Q9BR09 285 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 RHPN1-AS1Q9BWJ2 59 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 GSKIPQ9P0R6 139 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 SMPXQ9UHP9 88 aa9.79□□□□□ -0.84
CLK3-224ENST00000568605 OR4C46A6NHA9 309 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 ZFP92A6NM28 416 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 A8MZ25 164 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 CCSO14618 274 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 TSPAN4O14817 238 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 TSC22D2O75157 780 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 TOMM40O96008 361 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 IGKV1-17P01599 117 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 NHLRC4P0CG21 123 aaPredicted RBP9.78□□□□□ -0.84
CLK3-224ENST00000568605 IGHV4-30-4P0DP06 118 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 NPPCP23582 126 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 NUP62P37198 522 aaPredicted RBP9.78□□□□□ -0.84
CLK3-224ENST00000568605 IFITM3Q01628 133 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 MLANAQ16655 118 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 GSG1LQ6UXU4 331 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 NPIPB3Q92617 1050 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 TUBA4BQ9H853 241 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 PSENENQ9NZ42 101 aa9.78□□□□□ -0.84
CLK3-224ENST00000568605 ZNF785A8K8V0 405 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 SNRPGP15A8MWD9 76 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 INMT-MINDY4F8WBC2 141 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 L7N2F9 121 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 CHEK1O14757 476 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 FRMD6-AS1P0C7T7 363 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 PVALBP20472 110 aaPredicted RBP9.77□□□□□ -0.85
CLK3-224ENST00000568605 EIF2B2P49770 351 aaKnown RBP9.77□□□□□ -0.85
CLK3-224ENST00000568605 TAS2R30P59541 319 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 VAMP2P63027 116 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 PAFAH1B2P68402 229 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 AKR1C1Q04828 323 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 Q8N1Y9 231 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 SMIM8Q96KF7 97 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 PFDN2Q9UHV9 154 aa9.77□□□□□ -0.85
CLK3-224ENST00000568605 IGHV3-49A0A0A0MS15 119 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 IL4P05112 153 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 RD3LP0DJH9 198 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 GAMTQ14353 236 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 OR51G1Q8NGK1 321 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 ZNF414Q96IQ9 312 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 C2orf50Q96LR7 162 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 RNF2Q99496 336 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 MARVELD1Q9BSK0 173 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 VSIRQ9H7M9 311 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 RCL1Q9Y2P8 373 aaKnown RBP9.76□□□□□ -0.85
CLK3-224ENST00000568605 SELENOKQ9Y6D0 94 aa9.76□□□□□ -0.85
CLK3-224ENST00000568605 COL7A1Q02388 2944 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 OR11H12B2RN74 326 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 PTTG1O95997 202 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 CFDP00746 253 aaPredicted RBP9.75□□□□□ -0.85
CLK3-224ENST00000568605 HNRNPCP07910 306 aaKnown RBP eCLIP9.75□□□□□ -0.85
CLK3-224ENST00000568605 CD7P09564 240 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 CRYBB3P26998 211 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 S100A10P60903 97 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 ACOT7LQ6ZUV0 252 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 TCF24Q7RTU0 167 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 ST8SIA2Q92186 375 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 RNF125Q96EQ8 232 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 MGAT4CQ9UBM8 478 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 RABAC1Q9UI14 185 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 LSM5Q9Y4Y9 91 aaKnown RBP9.75□□□□□ -0.85
CLK3-224ENST00000568605 DNAH9Q9NYC9 4486 aa9.75□□□□□ -0.85
CLK3-224ENST00000568605 IGHV3OR16-13A0A075B7E8 117 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 IGHV3-74A0A0B4J1X5 117 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 SMCO3A2RU48 225 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 PRSS46E5RG02 174 aa9.74□□□□□ -0.85
CLK3-224ENST00000568605 MBPP02686 304 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms