RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ATG12O94817 140 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 GIG44P09565 113 aaPredicted RBP10.86□□□□□ -0.67
CLN3-236ENST00000568558 NPPCP23582 126 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 HOXA1P49639 335 aaPredicted RBP10.86□□□□□ -0.67
CLN3-236ENST00000568558 TRPT1Q86TN4 253 aaKnown RBP10.86□□□□□ -0.67
CLN3-236ENST00000568558 CCDC71LQ8N9Z2 235 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 GRAMD2BQ96HH9 432 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 PRRT1Q99946 306 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 HRH4Q9H3N8 390 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 NDUFA13Q9P0J0 144 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 GPR132Q9UNW8 380 aa10.86□□□□□ -0.67
CLN3-236ENST00000568558 A0A0G2JRQ6 117 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 OR5AC1P0C628 307 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 UCP1P25874 307 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 CRYBB3P26998 211 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 OPRK1P41145 380 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 SURF2Q15527 256 aaPredicted RBP10.85□□□□□ -0.67
CLN3-236ENST00000568558 BSXQ3C1V8 233 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 STXBP6Q8NFX7 210 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 OR4X1Q8NH49 305 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 LHFPL5Q8TAF8 219 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 TMEM230Q96A57 120 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 METTL26Q96S19 204 aa10.85□□□□□ -0.67
CLN3-236ENST00000568558 SDHCQ99643 169 aaPredicted RBP10.85□□□□□ -0.67
CLN3-236ENST00000568558 C14orf166Q9Y224 244 aaKnown RBP10.85□□□□□ -0.67
CLN3-236ENST00000568558 IGHV4-28A0A0C4DH34 117 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 C11orf94C9JXX5 98 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 RBMY1A1P0DJD3 496 aaKnown RBP10.84□□□□□ -0.67
CLN3-236ENST00000568558 RBMY1CP0DJD4 496 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 SPP1P10451 314 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 C4BPBP20851 252 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 P2RY1P47900 373 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 RBMY1FQ15415 496 aaKnown RBP10.84□□□□□ -0.67
CLN3-236ENST00000568558 BAK1Q16611 211 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 MLANAQ16655 118 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 TRIM16LQ309B1 348 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 TMEM41BQ5BJD5 291 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 SPANXN2Q5MJ10 180 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 MORN3Q6PF18 240 aaPredicted RBP10.84□□□□□ -0.67
CLN3-236ENST00000568558 TOMM5Q8N4H5 51 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 NAA60Q9H7X0 242 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 ENY2Q9NPA8 101 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 APLNQ9ULZ1 77 aa10.84□□□□□ -0.67
CLN3-236ENST00000568558 TEX13DA0A0J9YY54 714 aaPredicted RBP10.83□□□□□ -0.68
CLN3-236ENST00000568558 CRYM-AS1A6NIL9 109 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 ZNF705EA8MWA4 302 aaPredicted RBP10.83□□□□□ -0.68
CLN3-236ENST00000568558 IGLL5B9A064 214 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 SCGB2A1O75556 95 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 IGKV1-17P01599 117 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 ZNF688P0C7X2 276 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 MIFP14174 115 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 TIGITQ495A1 244 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 DCANP1Q8TF63 244 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 GLYATL2Q8WU03 294 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 RRNAD1Q96FB5 475 aaKnown RBP10.83□□□□□ -0.68
CLN3-236ENST00000568558 TMEM222Q9H0R3 208 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 PRR13Q9NZ81 148 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 SCP2D1Q9UJQ7 156 aa10.83□□□□□ -0.68
CLN3-236ENST00000568558 TRAV30A0A087WSZ9 112 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 KNCNA6PVL3 124 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 AP3S2P59780 193 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 AARDQ4LEZ3 155 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 Q6ZRM9 215 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 RNASE11Q8TAA1 199 aaKnown RBP10.82□□□□□ -0.68
CLN3-236ENST00000568558 NARS2Q96I59 477 aaKnown RBP10.82□□□□□ -0.68
CLN3-236ENST00000568558 X6R8D5 127 aa10.82□□□□□ -0.68
CLN3-236ENST00000568558 B3GALNT1O75752 331 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 CDS2O95674 445 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 HLA-DMBP28068 263 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 FAUP35544 74 aaKnown RBP10.81□□□□□ -0.68
CLN3-236ENST00000568558 HTR2BP41595 481 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 SPCS3P61009 180 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 SUPT4H1P63272 117 aaKnown RBP10.81□□□□□ -0.68
CLN3-236ENST00000568558 ACTL10Q5JWF8 245 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 SELENOHQ8IZQ5 122 aaKnown RBP10.81□□□□□ -0.68
CLN3-236ENST00000568558 OR52E5Q8NH55 327 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 U3KQE9 123 aa10.81□□□□□ -0.68
CLN3-236ENST00000568558 KIAA1109Q2LD37 5005 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 RPS10-NUDT3A0A1W2PQS6 291 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 A6NHS1 94 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 IGLC1P0CG04 106 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 AKR1C4P17516 323 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 EIF2B2P49770 351 aaKnown RBP10.8□□□□□ -0.68
CLN3-236ENST00000568558 DHRS2Q13268 280 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 Q6ZTC4 211 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 FAM219AQ8IW50 185 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 CSNK1G2-AS1Q8NCQ2 148 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 OR1S2Q8NGQ3 325 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 GLMPQ8WWB7 406 aa10.8□□□□□ -0.68
CLN3-236ENST00000568558 ELOA3CA0A087WX78 387 aaPredicted RBP10.79□□□□□ -0.68
CLN3-236ENST00000568558 TRAV10A0A0B4J240 114 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 LINC00854A0A1B0GVQ3 168 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 HELTA6NFD8 242 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 CCR6P51684 374 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 RND2P52198 227 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 CNPY1Q3B7I2 92 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 C2orf83Q53S99 150 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 TMEM268Q5VZI3 342 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 PRSS54Q6PEW0 395 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 C16orf54Q6UWD8 224 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms