RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TYMSP04818 313 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 PYYP10082 97 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 CD24P25063 80 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 SUMO1P63165 101 aaKnown RBP16.15■□□□□ 0.18
CLN3-230ENST00000568076 UBE2L3P68036 154 aaKnown RBP16.15■□□□□ 0.18
CLN3-230ENST00000568076 PAX2Q02962 417 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 PLGLAQ15195 96 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 KCNIP4Q6PIL6 250 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 TRGV9Q99603 122 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 TCEAL7Q9BRU2 100 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 BPIFB3P59826 476 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 IMMP2LQ96T52 175 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 LY96Q9Y6Y9 160 aa16.15■□□□□ 0.18
CLN3-230ENST00000568076 HELTA6NFD8 242 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 FOXL1Q12952 345 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 LINC00305Q7Z4B0 112 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 VMO1Q7Z5L0 202 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 OR10G8Q8NGN5 311 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 PAXXQ9BUH6 204 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 GSX1Q9H4S2 264 aaPredicted RBP16.13■□□□□ 0.17
CLN3-230ENST00000568076 CORTO00230 105 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 NBR2O15453 112 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 S100A9P06702 114 aaKnown RBP16.13■□□□□ 0.17
CLN3-230ENST00000568076 CEACAM3P40198 252 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 LCN2P80188 198 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 CENPWQ5EE01 88 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 HIST3H2BBQ8N257 126 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 SGMS2Q8NHU3 365 aa16.13■□□□□ 0.17
CLN3-230ENST00000568076 ORM2P19652 201 aa16.12■□□□□ 0.17
CLN3-230ENST00000568076 ACTL10Q5JWF8 245 aa16.12■□□□□ 0.17
CLN3-230ENST00000568076 DYNAPQ8N1N2 210 aa16.12■□□□□ 0.17
CLN3-230ENST00000568076 GPR61Q9BZJ8 451 aa16.12■□□□□ 0.17
CLN3-230ENST00000568076 OR51M1Q9H341 326 aa16.12■□□□□ 0.17
CLN3-230ENST00000568076 ELOA3CA0A087WX78 387 aaPredicted RBP16.11■□□□□ 0.17
CLN3-230ENST00000568076 NDUFA3O95167 84 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 OR5I1Q13606 314 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 PDZD11Q5EBL8 140 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 C1orf122Q6ZSJ8 110 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 NPBQ8NG41 125 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 OR1B1Q8NGR6 318 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 C22orf15Q8WYQ4 148 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 FXYD5Q96DB9 178 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 I3L2K1 104 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 GNG4P50150 75 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 SSX2Q16385 188 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 WNT10AQ9GZT5 417 aa16.11■□□□□ 0.17
CLN3-230ENST00000568076 SLC17A3O00476 420 aa16.1■□□□□ 0.17
CLN3-230ENST00000568076 CNIH1O95406 144 aa16.1■□□□□ 0.17
CLN3-230ENST00000568076 HOXB4P17483 251 aaPredicted RBP16.1■□□□□ 0.17
CLN3-230ENST00000568076 KIR3DL3Q8N743 410 aa16.1■□□□□ 0.17
CLN3-230ENST00000568076 PKD1L2Q7Z442 2459 aa16.1■□□□□ 0.17
CLN3-230ENST00000568076 A0A0U1RQK1 487 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 ZNF320A2RRD8 509 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 IGLV2-8P01709 118 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 SNRPCP09234 159 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 EFNA4P52798 201 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 SRSF8Q9BRL6 282 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 GAR1Q9NY12 217 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 ASH1LQ9NR48 2969 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 RPL15P61313 204 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 PERPQ96FX8 193 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 IGF2BP2-AS1Q96M15 143 aa16.09■□□□□ 0.17
CLN3-230ENST00000568076 FAM103A1Q9BTL3 118 aaKnown RBP16.09■□□□□ 0.17
CLN3-230ENST00000568076 IGLC1P0CG04 106 aa16.08■□□□□ 0.16
CLN3-230ENST00000568076 HES1Q14469 280 aa16.08■□□□□ 0.16
CLN3-230ENST00000568076 ZNF329Q86UD4 541 aa16.08■□□□□ 0.16
CLN3-230ENST00000568076 PITPNC1Q9UKF7 332 aa16.08■□□□□ 0.16
CLN3-230ENST00000568076 CACNA1AO00555 2505 aa16.08■□□□□ 0.16
CLN3-230ENST00000568076 PLP1P60201 277 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 FXYD3Q14802 87 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 LINC00479Q96M42 142 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 SIRPDQ9H106 197 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 IL36BQ9NZH7 164 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 V9GYV3 84 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 PIEZO1Q92508 2521 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 K7EIM0 57 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 HYPMO75409 117 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 ERVFC1-1P60608 527 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 C5orf64Q2M2E5 130 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 NIT2Q9NQR4 276 aa16.07■□□□□ 0.16
CLN3-230ENST00000568076 S100A2P29034 98 aa16.06■□□□□ 0.16
CLN3-230ENST00000568076 MYCNOSP40205 109 aa16.06■□□□□ 0.16
CLN3-230ENST00000568076 GCGP01275 180 aa16.06■□□□□ 0.16
CLN3-230ENST00000568076 PSG1P11464 419 aa16.06■□□□□ 0.16
CLN3-230ENST00000568076 TIGITQ495A1 244 aa16.06■□□□□ 0.16
CLN3-230ENST00000568076 PYY3Q5JQD4 70 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 LEMD1Q68G75 181 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 Q8N6K4 173 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 STXBP6Q8NFX7 210 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 OR10D4PQ8NGN7 298 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 BTF3L4Q96K17 158 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 BPESC1Q9GZL8 116 aa16.05■□□□□ 0.16
CLN3-230ENST00000568076 RNASE7Q9H1E1 156 aaKnown RBP16.05■□□□□ 0.16
CLN3-230ENST00000568076 IGHV2-70DA0A0C4DH43 119 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 IGKV1-17P01599 117 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 GP9P14770 177 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 MINOS1Q5TGZ0 78 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 CCDC144NLQ6NUI1 221 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 TMEM183AQ8IXX5 376 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 CDC42EP3Q9UKI2 254 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms