RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NPY1RP25929 384 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 RND2P52198 227 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 SMCO1Q147U7 214 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 ETFRF1Q6IPR1 90 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 PRSS54Q6PEW0 395 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 Q8WTZ3 238 aa15.32■□□□□ 0.04
CLN3-219ENST00000565778 CRYBB3P26998 211 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 SRPXP78539 464 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 TNFRSF9Q07011 255 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 OR1S2Q8NGQ3 325 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 TRIM63Q969Q1 353 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 RNF183Q96D59 192 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 CSTL1Q9H114 145 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 RABAC1Q9UI14 185 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 U3KQ87 197 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 V9GYH0 126 aa15.31■□□□□ 0.04
CLN3-219ENST00000565778 PIGBOS1A0A0B4J2F0 54 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 A0A0J9YWU9 116 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 OR10J1P30954 320 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 OR1S1Q8NH92 325 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 DTD1Q8TEA8 209 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 TMEM170AQ8WVE7 144 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 NPIPB3Q92617 1050 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 RBKSQ9H477 322 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 HSPB7Q9UBY9 170 aa15.3■□□□□ 0.04
CLN3-219ENST00000565778 MPTX1A8MV57 137 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 IGLC1P0CG04 106 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 DEFB131AP59861 70 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 YPEL3P61236 119 aaPredicted RBP15.29■□□□□ 0.04
CLN3-219ENST00000565778 RBMS2Q15434 407 aaKnown RBP15.29■□□□□ 0.04
CLN3-219ENST00000565778 ZNF79Q15937 498 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 TMEM128Q5BJH2 165 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 LYG2Q86SG7 212 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 CCDC190Q86UF4 302 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 ACY3Q96HD9 319 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 GRAMD2BQ96HH9 432 aa15.29■□□□□ 0.04
CLN3-219ENST00000565778 SLC25A21Q9BQT8 299 aaPredicted RBP15.29■□□□□ 0.04
CLN3-219ENST00000565778 TRAV2A0A0B4J234 112 aa15.28■□□□□ 0.04
CLN3-219ENST00000565778 VAMP1P23763 118 aa15.28■□□□□ 0.04
CLN3-219ENST00000565778 P2RY1P47900 373 aa15.28■□□□□ 0.04
CLN3-219ENST00000565778 STXBP6Q8NFX7 210 aa15.28■□□□□ 0.04
CLN3-219ENST00000565778 CSMD3Q7Z407 3707 aa15.28■□□□□ 0.04
CLN3-219ENST00000565778 JTBO76095 146 aa15.27■□□□□ 0.04
CLN3-219ENST00000565778 IFNA4P05014 189 aa15.27■□□□□ 0.04
CLN3-219ENST00000565778 SPANXN2Q5MJ10 180 aa15.27■□□□□ 0.04
CLN3-219ENST00000565778 LEMD1Q68G75 181 aa15.27■□□□□ 0.04
CLN3-219ENST00000565778 RBM38Q9H0Z9 239 aaKnown RBP15.27■□□□□ 0.04
CLN3-219ENST00000565778 DYNC2H1Q8NCM8 4307 aaKnown RBP15.26■□□□□ 0.03
CLN3-219ENST00000565778 HNRNPCP07910 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-219ENST00000565778 RD3LP0DJH9 198 aa15.26■□□□□ 0.03
CLN3-219ENST00000565778 FAM24BQ8N5W8 94 aa15.26■□□□□ 0.03
CLN3-219ENST00000565778 DEDD2Q8WXF8 326 aa15.26■□□□□ 0.03
CLN3-219ENST00000565778 DUXBA0A1W2PPF3 345 aa15.25■□□□□ 0.03
CLN3-219ENST00000565778 CXorf65A6NEN9 183 aa15.25■□□□□ 0.03
CLN3-219ENST00000565778 ZNF701M0R085 212 aaPredicted RBP15.25■□□□□ 0.03
CLN3-219ENST00000565778 IL4P05112 153 aa15.25■□□□□ 0.03
CLN3-219ENST00000565778 INPP1P49441 399 aa15.25■□□□□ 0.03
CLN3-219ENST00000565778 EIF2B2P49770 351 aaKnown RBP15.25■□□□□ 0.03
CLN3-219ENST00000565778 ATP5IP56385 69 aaPredicted RBP15.25■□□□□ 0.03
CLN3-219ENST00000565778 K7EQG2 157 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 EWSR1Q01844 656 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-219ENST00000565778 PMS2P11Q13670 270 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 STHQ8IWL8 128 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 RARRES2Q99969 163 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 U3KQE9 123 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 STARD9Q9P2P6 4700 aa15.24■□□□□ 0.03
CLN3-219ENST00000565778 HELTA6NFD8 242 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 SFT2D2O95562 160 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 TOMM40O96008 361 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 AP2S1P53680 142 aaPredicted RBP15.23■□□□□ 0.03
CLN3-219ENST00000565778 C16orf54Q6UWD8 224 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 CENPSQ8N2Z9 138 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 TMEM217Q8N7C4 229 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 LRTM2Q8N967 370 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 GATAD1Q8WUU5 269 aa15.23■□□□□ 0.03
CLN3-219ENST00000565778 PITX3O75364 302 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 CA1P00915 261 aaPredicted RBP15.22■□□□□ 0.03
CLN3-219ENST00000565778 ZNF688P0C7X2 276 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 PSG1P11464 419 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 GPX4P36969 197 aaPredicted RBP15.22■□□□□ 0.03
CLN3-219ENST00000565778 DHRS2Q13268 280 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 PPP1R1AQ13522 171 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 USF2Q15853 346 aaPredicted RBP15.22■□□□□ 0.03
CLN3-219ENST00000565778 SRRQ9GZT4 340 aa15.22■□□□□ 0.03
CLN3-219ENST00000565778 PAIP2BQ9ULR5 123 aaKnown RBP15.22■□□□□ 0.03
CLN3-219ENST00000565778 ZFP92A6NM28 416 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 MED6O75586 246 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 HOXB5P09067 269 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 IAPPP10997 89 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 SLC25A6P12236 298 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 RAB11AP62491 216 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 GAMTQ14353 236 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 OR51G1Q8NGK1 321 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 OR11H2Q8NH07 326 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 SLC35E1Q96K37 410 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 TMED3Q9Y3Q3 217 aa15.21■□□□□ 0.03
CLN3-219ENST00000565778 BAK1Q16611 211 aa15.2■□□□□ 0.02
CLN3-219ENST00000565778 TRIQKQ629K1 86 aa15.2■□□□□ 0.02
CLN3-219ENST00000565778 DCANP1Q8TF63 244 aa15.2■□□□□ 0.02
CLN3-219ENST00000565778 GLMPQ8WWB7 406 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms