RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 LRTM2Q8N967 370 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 OR1S1Q8NH92 325 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 DTD1Q8TEA8 209 aa13.6□□□□□ -0.23
CLN3-214ENST00000565140 SFT2D2O95562 160 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 IFNA10P01566 189 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 SLC25A4P12235 298 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 RPL35AP18077 110 aaKnown RBP13.59□□□□□ -0.23
CLN3-214ENST00000565140 CRYBB3P26998 211 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 OR10J1P30954 320 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 WFDC3Q8IUB2 231 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 OR1S2Q8NGQ3 325 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 NPIPB3Q92617 1050 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 MS4A6AQ9H2W1 248 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 U3KQ87 197 aa13.59□□□□□ -0.23
CLN3-214ENST00000565140 DUXBA0A1W2PPF3 345 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 BMI1P35226 326 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 APOC4P55056 127 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 RBMS2Q15434 407 aaKnown RBP13.58□□□□□ -0.24
CLN3-214ENST00000565140 NOXA1Q86UR1 476 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 CENPSQ8N2Z9 138 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 ACY3Q96HD9 319 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 METTL26Q96S19 204 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 MAP6D1Q9H9H5 199 aa13.58□□□□□ -0.24
CLN3-214ENST00000565140 SCGB2A1O75556 95 aa13.57□□□□□ -0.24
CLN3-214ENST00000565140 CD5P06127 495 aa13.57□□□□□ -0.24
CLN3-214ENST00000565140 YPEL3P61236 119 aaPredicted RBP13.57□□□□□ -0.24
CLN3-214ENST00000565140 RPL11P62913 178 aaKnown RBP13.57□□□□□ -0.24
CLN3-214ENST00000565140 PAFAH1B2P68402 229 aa13.57□□□□□ -0.24
CLN3-214ENST00000565140 ETFRF1Q6IPR1 90 aa13.57□□□□□ -0.24
CLN3-214ENST00000565140 FAM24BQ8N5W8 94 aa13.57□□□□□ -0.24
CLN3-214ENST00000565140 PIGBOS1A0A0B4J2F0 54 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 KIR2DL5BA0A0G2JN68 375 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 KIR2DL5BA0A0G2JPC4 375 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 LINC00854A0A1B0GVQ3 168 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 DNASE2O00115 360 aaPredicted RBP13.56□□□□□ -0.24
CLN3-214ENST00000565140 CMC4P56277 68 aaPredicted RBP13.56□□□□□ -0.24
CLN3-214ENST00000565140 DEFB135Q30KP9 77 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 TRIQKQ629K1 86 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 Q6ZWC4 215 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 KIR2DL5AQ8N109 375 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 KIR2DL5BQ8NHK3 375 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 Q8WTZ3 238 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 TMEM231Q9H6L2 316 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 FLVCR2Q9UPI3 526 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 U3KQE9 123 aa13.56□□□□□ -0.24
CLN3-214ENST00000565140 A0A1W2PS18 150 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 UBE2CO00762 179 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 SPRY2O43597 315 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 NDUFB6O95139 128 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 IFNA4P05014 189 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 HOXB5P09067 269 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 IAPPP10997 89 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 SLC25A6P12236 298 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 P2RY1P47900 373 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 INPP1P49441 399 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 STPG3Q8N7X2 389 aa13.55□□□□□ -0.24
CLN3-214ENST00000565140 C9orf170A2RU37 121 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 NAP1L6A6NFF2 107 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 BTCP35070 178 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 USF2Q15853 346 aaPredicted RBP13.54□□□□□ -0.24
CLN3-214ENST00000565140 GGNBP1Q5YKI7 109 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 RNF183Q96D59 192 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 RABAC1Q9UI14 185 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 TP53TG1Q9Y2A0 90 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 TMED3Q9Y3Q3 217 aa13.54□□□□□ -0.24
CLN3-214ENST00000565140 SACSQ9NZJ4 4579 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 TRAV2A0A0B4J234 112 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 TOMM40O96008 361 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 RD3LP0DJH9 198 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 PSG1P11464 419 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 GPX4P36969 197 aaPredicted RBP13.53□□□□□ -0.24
CLN3-214ENST00000565140 ATP5IP56385 69 aaPredicted RBP13.53□□□□□ -0.24
CLN3-214ENST00000565140 DEFB131AP59861 70 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 UBE2MP61081 183 aaKnown RBP13.53□□□□□ -0.24
CLN3-214ENST00000565140 GAMTQ14353 236 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 LEMD1Q68G75 181 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 STXBP6Q8NFX7 210 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 MAGT1Q9H0U3 335 aa13.53□□□□□ -0.24
CLN3-214ENST00000565140 FAM90A26D6RGX4 464 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 K7EQG2 157 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 IL4P05112 153 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 HNRNPCP07910 306 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLN3-214ENST00000565140 IL7P13232 177 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 C16orf54Q6UWD8 224 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 NARS2Q96I59 477 aaKnown RBP13.52□□□□□ -0.25
CLN3-214ENST00000565140 NDUFA13Q9P0J0 144 aa13.52□□□□□ -0.25
CLN3-214ENST00000565140 IGKV1D-37A0A075B6S9 117 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 ADAP1O75689 374 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 EWSR1Q01844 656 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLN3-214ENST00000565140 IL17DQ8TAD2 202 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 DCANP1Q8TF63 244 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 GLMPQ8WWB7 406 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 CSTL1Q9H114 145 aa13.51□□□□□ -0.25
CLN3-214ENST00000565140 A0A0J9YWU9 116 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 LCE6AA0A183 80 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 MPTX1A8MV57 137 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 WRBO00258 174 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 SYNGR2O43760 224 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 MED6O75586 246 aa13.5□□□□□ -0.25
CLN3-214ENST00000565140 OR4E1P0C645 316 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms