RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PRSS54Q6PEW0 395 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 DEFB125Q8N687 156 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 Q8WTZ3 238 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 RCHY1Q96PM5 261 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 SPATA25Q9BR10 227 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 TM2D3Q9BRN9 247 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 SRD5A3Q9H8P0 318 aa10.04□□□□□ -0.8
CLK3-216ENST00000564468 PLA2G10O15496 165 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 SYNGR2O43760 224 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 OR10J1P30954 320 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 GPX4P36969 197 aaPredicted RBP10.03□□□□□ -0.8
CLK3-216ENST00000564468 YPEL3P61236 119 aaPredicted RBP10.03□□□□□ -0.8
CLK3-216ENST00000564468 HAGHQ16775 308 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 TMEM170AQ8WVE7 144 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 ZNF414Q96IQ9 312 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 METTL26Q96S19 204 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 FAM110AQ9BQ89 295 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 WDR12Q9GZL7 423 aaKnown RBP10.03□□□□□ -0.8
CLK3-216ENST00000564468 ZFAND3Q9H8U3 227 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 BATF3Q9NR55 127 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 PTTG2Q9NZH5 202 aa10.03□□□□□ -0.8
CLK3-216ENST00000564468 MRPL36Q9P0J6 103 aaKnown RBP10.03□□□□□ -0.8
CLK3-216ENST00000564468 IGKV1-17P01599 117 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 TCRBP04435 133 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 IGLC1P0CG04 106 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 ANXA7P20073 488 aaKnown RBP10.02□□□□□ -0.81
CLK3-216ENST00000564468 TIGITQ495A1 244 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 MZT2BQ6NZ67 158 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 LINC00322Q6ZN03 302 aaPredicted RBP10.02□□□□□ -0.81
CLK3-216ENST00000564468 NPIPB3Q92617 1050 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 ACY3Q96HD9 319 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 SLC35E1Q96K37 410 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 RNF2Q99496 336 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 C20orf85Q9H1P6 137 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 VSIRQ9H7M9 311 aa10.02□□□□□ -0.81
CLK3-216ENST00000564468 IGHV3-49A0A0A0MS15 119 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 WRBO00258 174 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 ADAP1O75689 374 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 FABP1P07148 127 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 IAPPP10997 89 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 ZNF846Q147U1 533 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 MITD1Q8WV92 249 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 GRAMD2BQ96HH9 432 aa10.01□□□□□ -0.81
CLK3-216ENST00000564468 PAIP2BQ9ULR5 123 aaKnown RBP10.01□□□□□ -0.81
CLK3-216ENST00000564468 STAB2Q8WWQ8 2551 aa10□□□□□ -0.81
CLK3-216ENST00000564468 LOC102724200A0A096LPH7 203 aaPredicted RBP10□□□□□ -0.81
CLK3-216ENST00000564468 FAM240BA0A1B0GVZ2 78 aa10□□□□□ -0.81
CLK3-216ENST00000564468 CRYBB3P26998 211 aa10□□□□□ -0.81
CLK3-216ENST00000564468 NKX2-1P43699 371 aaPredicted RBP10□□□□□ -0.81
CLK3-216ENST00000564468 EIF2B2P49770 351 aaKnown RBP10□□□□□ -0.81
CLK3-216ENST00000564468 ID3Q02535 119 aa10□□□□□ -0.81
CLK3-216ENST00000564468 FAM90A2PQ658T7 463 aa10□□□□□ -0.81
CLK3-216ENST00000564468 TCF24Q7RTU0 167 aa10□□□□□ -0.81
CLK3-216ENST00000564468 ST8SIA2Q92186 375 aa10□□□□□ -0.81
CLK3-216ENST00000564468 MAGT1Q9H0U3 335 aa10□□□□□ -0.81
CLK3-216ENST00000564468 WFDC10AQ9H1F0 79 aa10□□□□□ -0.81
CLK3-216ENST00000564468 PFDN2Q9UHV9 154 aa10□□□□□ -0.81
CLK3-216ENST00000564468 IGHV3OR16-13A0A075B7E8 117 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 IGHV3-74A0A0B4J1X5 117 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 TRAV2A0A0B4J234 112 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 RBMY1BA6NDE4 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 RBMY1EA6NEQ0 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 ZFP92A6NM28 416 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 DNASE2O00115 360 aaPredicted RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 TOMM40O96008 361 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 HNRNPCP07910 306 aaKnown RBP eCLIP9.99□□□□□ -0.81
CLK3-216ENST00000564468 RBMY1DP0C7P1 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 RD3LP0DJH9 198 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 RPL11P62913 178 aaKnown RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 GGTLC1Q9BX51 225 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 NUDT15Q9NV35 164 aa9.99□□□□□ -0.81
CLK3-216ENST00000564468 STRAPQ9Y3F4 350 aaKnown RBP9.99□□□□□ -0.81
CLK3-216ENST00000564468 IGKV3-7A0A075B6H7 116 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 TRAV6A0A075B6T7 132 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 DFFBO76075 338 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 APOHP02749 345 aaPredicted RBP9.98□□□□□ -0.81
CLK3-216ENST00000564468 IL4P05112 153 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 H2AFB2P0C5Z0 115 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 NUP62P37198 522 aaPredicted RBP9.98□□□□□ -0.81
CLK3-216ENST00000564468 AP2S1P53680 142 aaPredicted RBP9.98□□□□□ -0.81
CLK3-216ENST00000564468 ASAH1Q13510 395 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 GAMTQ14353 236 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 IAH1Q2TAA2 248 aaPredicted RBP9.98□□□□□ -0.81
CLK3-216ENST00000564468 SPANXN5Q5MJ07 72 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 OR51G1Q8NGK1 321 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 OR4D5Q8NGN0 318 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 UBQLN2Q9UHD9 624 aa9.98□□□□□ -0.81
CLK3-216ENST00000564468 HELTA6NFD8 242 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 MPTX1A8MV57 137 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 UPK1BO75841 260 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 PSG1P11464 419 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 P2RY1P47900 373 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 TFPI2P48307 235 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 APOC4P55056 127 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 POLR2GP62487 172 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLK3-216ENST00000564468 ODF3L2Q3SX64 289 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 GBGT1Q8N5D6 347 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 ZNF431Q8TF32 576 aaPredicted RBP9.97□□□□□ -0.81
CLK3-216ENST00000564468 CITED4Q96RK1 184 aa9.97□□□□□ -0.81
CLK3-216ENST00000564468 RAB40CQ96S21 281 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms