RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 C4BPBP20851 252 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 CMC4P56277 68 aaPredicted RBP13.85□□□□□ -0.19
VPS35-202ENST00000561713 MRPS10P82664 201 aaKnown RBP13.85□□□□□ -0.19
VPS35-202ENST00000561713 SSBP1Q04837 148 aaKnown RBP13.85□□□□□ -0.19
VPS35-202ENST00000561713 AARDQ4LEZ3 155 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 PRSS54Q6PEW0 395 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 FAM219AQ8IW50 185 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 SLC24A4Q8NFF2 622 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.85□□□□□ -0.19
VPS35-202ENST00000561713 PKHD1P08F94 4074 aa13.85□□□□□ -0.19
VPS35-202ENST00000561713 K7EQG2 157 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 B3GALNT1O75752 331 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 CD5P06127 495 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 CRYBB3P26998 211 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 HTR2BP41595 481 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 RPL5P46777 297 aaKnown RBP13.84□□□□□ -0.19
VPS35-202ENST00000561713 STHQ8IWL8 128 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 DYNC2LI1Q8TCX1 351 aa13.84□□□□□ -0.19
VPS35-202ENST00000561713 C11orf68Q9H3H3 251 aaKnown RBP13.84□□□□□ -0.19
VPS35-202ENST00000561713 CCDC59Q9P031 241 aaKnown RBP13.84□□□□□ -0.19
VPS35-202ENST00000561713 TRAV2A0A0B4J234 112 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 RPS10-NUDT3A0A1W2PQS6 291 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 TMEM187Q14656 261 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 SURF2Q15527 256 aaPredicted RBP13.83□□□□□ -0.2
VPS35-202ENST00000561713 OR52E5Q8NH55 327 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 C11orf45Q8TAV5 145 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 ACY3Q96HD9 319 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 GPR132Q9UNW8 380 aa13.83□□□□□ -0.2
VPS35-202ENST00000561713 A0A1W2PS18 150 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 SCGB2A1O75556 95 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 GIG44P09565 113 aaPredicted RBP13.82□□□□□ -0.2
VPS35-202ENST00000561713 NPY1RP25929 384 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 OR10J1P30954 320 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 DHODHQ02127 395 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 USF2Q15853 346 aaPredicted RBP13.82□□□□□ -0.2
VPS35-202ENST00000561713 C2orf83Q53S99 150 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 TRPT1Q86TN4 253 aaKnown RBP13.82□□□□□ -0.2
VPS35-202ENST00000561713 OR1S2Q8NGQ3 325 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 DCANP1Q8TF63 244 aa13.82□□□□□ -0.2
VPS35-202ENST00000561713 ANKRD20A5PA0PJZ0 165 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 CTDSPLO15194 276 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 IFNA4P05014 189 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 ACTL10Q5JWF8 245 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 NARS2Q96I59 477 aaKnown RBP13.81□□□□□ -0.2
VPS35-202ENST00000561713 PRRT1Q99946 306 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 MCUBQ9NWR8 336 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 CLEC5AQ9NY25 188 aa13.81□□□□□ -0.2
VPS35-202ENST00000561713 DNAH17Q9UFH2 4485 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 IL4P05112 153 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 SULT1A3P0DMM9 295 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 SULT1A4P0DMN0 295 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 DHRS2Q13268 280 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 PSMG4Q5JS54 123 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 Q8NAQ8 132 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 RAB2BQ8WUD1 216 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 GLMPQ8WWB7 406 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 NPIPB3Q92617 1050 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 MFFQ9GZY8 342 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 TMEM56-RWDD3S4R434 201 aa13.8□□□□□ -0.2
VPS35-202ENST00000561713 TRAV30A0A087WSZ9 112 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 IGHV4-28A0A0C4DH34 117 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 HNRNPCP07910 306 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS35-202ENST00000561713 AKR1C4P17516 323 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 RNASEH2CQ8TDP1 164 aaKnown RBP13.79□□□□□ -0.2
VPS35-202ENST00000561713 C2CD4CQ8TF44 421 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 GRAMD2BQ96HH9 432 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 U3KQE9 123 aa13.79□□□□□ -0.2
VPS35-202ENST00000561713 H3BMQ9 156 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 SLC25A4P12235 298 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 SUPT4H1P63272 117 aaKnown RBP13.78□□□□□ -0.2
VPS35-202ENST00000561713 NMSQ5H8A3 153 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 C16orf54Q6UWD8 224 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 GSG1LQ6UXU4 331 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 LYZL2Q7Z4W2 148 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 Q8WTZ3 238 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 SLIRPQ9GZT3 109 aaKnown RBP13.78□□□□□ -0.2
VPS35-202ENST00000561713 RBKSQ9H477 322 aa13.78□□□□□ -0.2
VPS35-202ENST00000561713 HELTA6NFD8 242 aa13.77□□□□□ -0.21
VPS35-202ENST00000561713 GSTZ1O43708 216 aaPredicted RBP13.77□□□□□ -0.21
VPS35-202ENST00000561713 IFNA10P01566 189 aa13.77□□□□□ -0.21
VPS35-202ENST00000561713 RBMY1A1P0DJD3 496 aaKnown RBP13.77□□□□□ -0.21
VPS35-202ENST00000561713 RBMY1CP0DJD4 496 aa13.77□□□□□ -0.21
VPS35-202ENST00000561713 RBMY1FQ15415 496 aaKnown RBP13.77□□□□□ -0.21
VPS35-202ENST00000561713 YPEL3P61236 119 aaPredicted RBP13.76□□□□□ -0.21
VPS35-202ENST00000561713 SMCO1Q147U7 214 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 OR51G1Q8NGK1 321 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 DTD1Q8TEA8 209 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 IL22RA2Q969J5 263 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 HSPB7Q9UBY9 170 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 SCP2D1Q9UJQ7 156 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 APLNQ9ULZ1 77 aa13.76□□□□□ -0.21
VPS35-202ENST00000561713 IGLL5B9A064 214 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 FAM90A26D6RGX4 464 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 NOL3O60936 208 aaKnown RBP13.75□□□□□ -0.21
VPS35-202ENST00000561713 TOMM40O96008 361 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 SPP1P10451 314 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 TNFSF8P32971 234 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 TMBIM6P55061 237 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 TCTAP57738 103 aa13.75□□□□□ -0.21
VPS35-202ENST00000561713 DEFB1P60022 68 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms