RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RNASE11Q8TAA1 199 aaKnown RBP8.45□□□□□ -1.06
USP3-220ENST00000561381 ZFAND1Q8TCF1 268 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 C2CD4CQ8TF44 421 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 DCANP1Q8TF63 244 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 AP3S1Q92572 193 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 TMEM230Q96A57 120 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 RRNAD1Q96FB5 475 aaKnown RBP8.45□□□□□ -1.06
USP3-220ENST00000561381 KRTAP17-1Q9BYP8 105 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 MIXL1Q9H2W2 232 aa8.45□□□□□ -1.06
USP3-220ENST00000561381 IGHV4-28A0A0C4DH34 117 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 GABARAPO95166 117 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 SMIM18P0DKX4 95 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 TAS2R19P59542 299 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 SPCS3P61009 180 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 ACTL10Q5JWF8 245 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 GPR107Q5VW38 600 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 STEAP1BQ6NZ63 245 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 PRSS54Q6PEW0 395 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 KRTAP19-1Q8IUB9 90 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 GLYATL2Q8WU03 294 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 TMEM170AQ8WVE7 144 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 RTBDNQ9BSG5 229 aaPredicted RBP8.44□□□□□ -1.06
USP3-220ENST00000561381 TMEM222Q9H0R3 208 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 CLEC5AQ9NY25 188 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 CACNG5Q9UF02 275 aa8.44□□□□□ -1.06
USP3-220ENST00000561381 IGLL5B9A064 214 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 NXPH3O95157 252 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 CDS2O95674 445 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 IGLC1P0CG04 106 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 RND2P52198 227 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 MEF2DQ14814 521 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 AARDQ4LEZ3 155 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 SELENOHQ8IZQ5 122 aaKnown RBP8.43□□□□□ -1.06
USP3-220ENST00000561381 OR52E5Q8NH55 327 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 GPR146Q96CH1 333 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 GRAMD2BQ96HH9 432 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.43□□□□□ -1.06
USP3-220ENST00000561381 APLNQ9ULZ1 77 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 U3KQE9 123 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 X6R8D5 127 aa8.43□□□□□ -1.06
USP3-220ENST00000561381 TEX13DA0A0J9YY54 714 aaPredicted RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 RPS10-NUDT3A0A1W2PQS6 291 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 GABARAPH6UMI1 98 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 CTDSP2O14595 271 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 SPP1P10451 314 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 HLA-DMBP28068 263 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 OR10J1P30954 320 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 HTR2BP41595 481 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 DHODHQ02127 395 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 DHRS2Q13268 280 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 USF2Q15853 346 aaPredicted RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 TMEM268Q5VZI3 342 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 C16orf54Q6UWD8 224 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 FAM219AQ8IW50 185 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 CSNK1G2-AS1Q8NCQ2 148 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 GLMPQ8WWB7 406 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 RBPMSQ93062 196 aaKnown RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 NARS2Q96I59 477 aaKnown RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 RAB40CQ96S21 281 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 NAA60Q9H7X0 242 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 HEYLQ9NQ87 328 aaPredicted RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 PRR13Q9NZ81 148 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 C14orf166Q9Y224 244 aaKnown RBP8.42□□□□□ -1.06
USP3-220ENST00000561381 HERC2O95714 4834 aa8.42□□□□□ -1.06
USP3-220ENST00000561381 TRAV30A0A087WSZ9 112 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 CEBPZOSA8MTT3 80 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 ZNF705EA8MWA4 302 aaPredicted RBP8.41□□□□□ -1.06
USP3-220ENST00000561381 RGS5O15539 181 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 SCGB2A1O75556 95 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 B3GALNT1O75752 331 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 HNRNPCP07910 306 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP3-220ENST00000561381 MIFP14174 115 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 C2orf83Q53S99 150 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 PSMG4Q5JS54 123 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 MORN3Q6PF18 240 aaPredicted RBP8.41□□□□□ -1.06
USP3-220ENST00000561381 Q6ZTC4 211 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 SLC24A4Q8NFF2 622 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 OR1S2Q8NGQ3 325 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 Q8WTZ3 238 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 NPIPB3Q92617 1050 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 HRH4Q9H3N8 390 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 GPR132Q9UNW8 380 aa8.41□□□□□ -1.06
USP3-220ENST00000561381 DNAH6Q9C0G6 4158 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 HELTA6NFD8 242 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 CRYM-AS1A6NIL9 109 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 C11orf94C9JXX5 98 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 IL4P05112 153 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 SLC25A4P12235 298 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 YPEL3P61236 119 aaPredicted RBP8.4□□□□□ -1.06
USP3-220ENST00000561381 SPCS2Q15005 226 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 TMEM41BQ5BJD5 291 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 ZNF767PQ75MW2 155 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 OR4C16Q8NGL9 310 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 RNASEH2CQ8TDP1 164 aaKnown RBP8.4□□□□□ -1.06
USP3-220ENST00000561381 C15orf40Q8WUR7 153 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 SMIM4Q8WVI0 70 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 TBC1D24Q9ULP9 559 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 CELA1Q9UNI1 258 aa8.4□□□□□ -1.06
USP3-220ENST00000561381 DISC1C4P0D8 188 aa8.39□□□□□ -1.07
USP3-220ENST00000561381 FAM90A26D6RGX4 464 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms