RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 TSPAN4O14817 238 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 IFNA4P05014 189 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 IL7P13232 177 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 NPPCP23582 126 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 Q8WTZ3 238 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 CCDC32Q9BV29 185 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 PFDN2Q9UHV9 154 aa11.9□□□□□ -0.5
LMX1B-204ENST00000561065 IGHV7-4-1A0A0J9YVY3 117 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 ZNF207O43670 478 aaKnown RBP11.89□□□□□ -0.51
LMX1B-204ENST00000561065 IGHV3-48P01763 117 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 FABP1P07148 127 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 EIF2B2P49770 351 aaKnown RBP11.89□□□□□ -0.51
LMX1B-204ENST00000561065 PPP1R1AQ13522 171 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 C4orf46Q504U0 113 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 OR1S2Q8NGQ3 325 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 RHPN1-AS1Q9BWJ2 59 aa11.89□□□□□ -0.51
LMX1B-204ENST00000561065 C9orf170A2RU37 121 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 GPX4P36969 197 aaPredicted RBP11.88□□□□□ -0.51
LMX1B-204ENST00000561065 MZT2BQ6NZ67 158 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 GRAMD2BQ96HH9 432 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 METTL26Q96S19 204 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 RBKSQ9H477 322 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 BATF3Q9NR55 127 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 PRR13Q9NZ81 148 aa11.88□□□□□ -0.51
LMX1B-204ENST00000561065 PUS1Q9Y606 427 aaKnown RBP eCLIP11.88□□□□□ -0.51
LMX1B-204ENST00000561065 LCE6AA0A183 80 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 LYRM1O43325 122 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 HOXB5P09067 269 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 OR4E1P0C645 316 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 ODF3L2Q3SX64 289 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 TOMM20LQ6UXN7 152 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 LYG2Q86SG7 212 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 GGTLC1Q9BX51 225 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 UBQLN2Q9UHD9 624 aa11.87□□□□□ -0.51
LMX1B-204ENST00000561065 WRBO00258 174 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 CHEK1O14757 476 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 PITX3O75364 302 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 NXPH3O95157 252 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 OR10J1P30954 320 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 YPEL3P61236 119 aaPredicted RBP11.86□□□□□ -0.51
LMX1B-204ENST00000561065 SLC35E1Q96K37 410 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 SDHCQ99643 169 aaPredicted RBP11.86□□□□□ -0.51
LMX1B-204ENST00000561065 FNDC4Q9H6D8 234 aaPredicted RBP11.86□□□□□ -0.51
LMX1B-204ENST00000561065 DNASE2O00115 360 aaPredicted RBP11.86□□□□□ -0.51
LMX1B-204ENST00000561065 SYNGR2O43760 224 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 RND2P52198 227 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 RPL11P62913 178 aaKnown RBP11.86□□□□□ -0.51
LMX1B-204ENST00000561065 DHRS2Q13268 280 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 GGNBP1Q5YKI7 109 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 PRSS54Q6PEW0 395 aa11.86□□□□□ -0.51
LMX1B-204ENST00000561065 EPPK1P58107 5090 aaKnown RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 LOC102724200A0A096LPH7 203 aaPredicted RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 IGHV3-49A0A0A0MS15 119 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 RD3LP0DJH9 198 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 S100A7P31151 101 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 NUP62P37198 522 aaPredicted RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 AP2S1P53680 142 aaPredicted RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 MLANAQ16655 118 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 ACY3Q96HD9 319 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 RNF2Q99496 336 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 OVOL2Q9BRP0 275 aa11.85□□□□□ -0.51
LMX1B-204ENST00000561065 WDR12Q9GZL7 423 aaKnown RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 PAIP2BQ9ULR5 123 aaKnown RBP11.85□□□□□ -0.51
LMX1B-204ENST00000561065 FAM240BA0A1B0GVZ2 78 aa11.84□□□□□ -0.51
LMX1B-204ENST00000561065 A6NHS1 94 aa11.84□□□□□ -0.51
LMX1B-204ENST00000561065 ZNF846Q147U1 533 aa11.84□□□□□ -0.51
LMX1B-204ENST00000561065 NPIPB3Q92617 1050 aa11.84□□□□□ -0.51
LMX1B-204ENST00000561065 MRPL36Q9P0J6 103 aaKnown RBP11.84□□□□□ -0.51
LMX1B-204ENST00000561065 ZFP92A6NM28 416 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 CFDP00746 253 aaPredicted RBP11.83□□□□□ -0.52
LMX1B-204ENST00000561065 TCRBP04435 133 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 NKX2-1P43699 371 aaPredicted RBP11.83□□□□□ -0.52
LMX1B-204ENST00000561065 APOC4P55056 127 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 TIGITQ495A1 244 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 TCF24Q7RTU0 167 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 VSIRQ9H7M9 311 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 ZFAND3Q9H8U3 227 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 PTTG2Q9NZH5 202 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 FLVCR2Q9UPI3 526 aa11.83□□□□□ -0.52
LMX1B-204ENST00000561065 STRAPQ9Y3F4 350 aaKnown RBP11.83□□□□□ -0.52
LMX1B-204ENST00000561065 IGHV3OR16-13A0A075B7E8 117 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 IGHV3-74A0A0B4J1X5 117 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 TRAV2A0A0B4J234 112 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 HELTA6NFD8 242 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 UBE2CO00762 179 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 PLA2G10O15496 165 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 IGKV1-17P01599 117 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 IGLC1P0CG04 106 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 ANXA7P20073 488 aaKnown RBP11.82□□□□□ -0.52
LMX1B-204ENST00000561065 CRYBB3P26998 211 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 ID3Q02535 119 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 ZNF124Q15973 351 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 FAM90A2PQ658T7 463 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 MITD1Q8WV92 249 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 C20orf85Q9H1P6 137 aa11.82□□□□□ -0.52
LMX1B-204ENST00000561065 SNRPGP15A8MWD9 76 aa11.81□□□□□ -0.52
LMX1B-204ENST00000561065 DFFBO76075 338 aa11.81□□□□□ -0.52
LMX1B-204ENST00000561065 TOMM40O96008 361 aa11.81□□□□□ -0.52
LMX1B-204ENST00000561065 APOHP02749 345 aaPredicted RBP11.81□□□□□ -0.52
LMX1B-204ENST00000561065 HNRNPCP07910 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms