RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 RTBDNQ9BSG5 229 aaPredicted RBP11.2□□□□□ -0.62
TRAF3-208ENST00000560371 Q9H3A6 140 aa11.2□□□□□ -0.62
TRAF3-208ENST00000560371 IGKV1-9A0A0C4DH69 117 aa11.2□□□□□ -0.62
TRAF3-208ENST00000560371 MPTX1A8MV57 137 aa11.2□□□□□ -0.62
TRAF3-208ENST00000560371 FOXG1P55316 489 aaPredicted RBP11.2□□□□□ -0.62
TRAF3-208ENST00000560371 SLC25A15Q9Y619 301 aa11.2□□□□□ -0.62
TRAF3-208ENST00000560371 GAGE10A6NGK3 116 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 CCL1P22362 96 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 RNF125Q96EQ8 232 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 K7ENP7 123 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 PAX8Q06710 450 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 OR9G9P0C7N8 305 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 ZNF585BQ52M93 769 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 VMO1Q7Z5L0 202 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 LINC00527Q9UJ94 153 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 FABP2P12104 132 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 ZNF319Q9P2F9 582 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 COL4A6Q14031 1691 aa11.19□□□□□ -0.62
TRAF3-208ENST00000560371 IGHV2-26A0A0B4J1V2 119 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 SRD5A1P18405 259 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 PVRIGQ6DKI7 326 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 PKIAP61925 76 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 BIVMQ86UB2 503 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 MBD3L1Q8WWY6 194 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 DUSP14O95147 198 aaKnown RBP11.18□□□□□ -0.62
TRAF3-208ENST00000560371 DEFB121Q5J5C9 76 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 DUTP33316 252 aaKnown RBP11.18□□□□□ -0.62
TRAF3-208ENST00000560371 ZNF362Q5T0B9 420 aaPredicted RBP11.18□□□□□ -0.62
TRAF3-208ENST00000560371 TMEM136Q6ZRR5 245 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 ALKBH7Q9BT30 221 aaPredicted RBP11.18□□□□□ -0.62
TRAF3-208ENST00000560371 ZFYVE26Q68DK2 2539 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 IGKV1D-13A0A0B4J2D9 117 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 MUC21A0A0G2JKD1 596 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 MUC21A0A140T8X8 626 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 IGKV1-13P0DP09 117 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 MUC21Q5SSG8 566 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 SLC50A1Q9BRV3 221 aa11.18□□□□□ -0.62
TRAF3-208ENST00000560371 TRBV7-9A0A0J9YWB2 115 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 TMEM200BQ69YZ2 307 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 CIARTQ8N365 385 aaPredicted RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 OR11H4Q8NGC9 324 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 TMEM160Q9NX00 188 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MBD3L4A6NDZ8 208 aaPredicted RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MBD3L3A6NE82 208 aaPredicted RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MBD3L5A6NJ08 208 aaPredicted RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 Q5BKY6 102 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MBD3L2Q8NHZ7 208 aaPredicted RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 VENTXO95231 258 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 FAM71F2Q6NXP2 309 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 HEPN1Q6WQI6 88 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 BMPERQ8N8U9 685 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 OR1P1Q8NH06 330 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 NXT2Q9NPJ8 142 aaKnown RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 PLXNA2O75051 1894 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 FABP5P3A8MUU1 101 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MINOS1Q5TGZ0 78 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 SSC4DQ8WTU2 575 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 ASCL2Q99929 193 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 CRIM1Q9NZV1 1036 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 MINOS1-NBL1R4GNA1 71 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 SPATA45Q537H7 98 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 PUSL1Q8N0Z8 303 aaKnown RBP11.17□□□□□ -0.62
TRAF3-208ENST00000560371 C18orf15Q96N68 181 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 TRAV21A0A0B4J279 112 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 H3BUX3 64 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 EFNA2O43921 213 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 KCNS1Q96KK3 526 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 PCNX3Q9H6A9 2034 aa11.17□□□□□ -0.62
TRAF3-208ENST00000560371 SCO2A0A1W2PP80 73 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 C12orf54Q6X4T0 127 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 FER1L6-AS1Q8NA97 138 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 FOXA3P55318 350 aaPredicted RBP11.16□□□□□ -0.62
TRAF3-208ENST00000560371 PAQR4Q8N4S7 273 aaPredicted RBP11.16□□□□□ -0.62
TRAF3-208ENST00000560371 TGIF2-C20orf24A0A0A6YYL0 155 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 TRAV41A0A0B4J266 112 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 CBLN1P23435 193 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 CFAP161Q6P656 301 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 MIR17HGQ75NE6 70 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 PRELID3AQ96N28 172 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 RPUSD1Q9UJJ7 312 aaKnown RBP11.16□□□□□ -0.62
TRAF3-208ENST00000560371 TRAV12-3A0A0B4J271 114 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 LDLRAD4O15165 306 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 SLC25A20O43772 301 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 PHLDA1Q8WV24 401 aaPredicted RBP11.16□□□□□ -0.62
TRAF3-208ENST00000560371 SAP30O75446 220 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 IGHV1-8P0DP01 117 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 SELLP14151 372 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 C3orf56Q8N813 242 aa11.16□□□□□ -0.62
TRAF3-208ENST00000560371 CD55P08174 381 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 CRYGSP22914 178 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 C15orf32Q32M92 178 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 Q6AWC8 147 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 TRGV4A0A0C4DH28 118 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 A0A1B0GV72 72 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 BRD3OSQ6XYD6 125 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 KLRD1Q13241 179 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 ZNF414Q96IQ9 312 aa11.15□□□□□ -0.62
TRAF3-208ENST00000560371 GRIFINA4D1Z8 144 aa11.15□□□□□ -0.63
TRAF3-208ENST00000560371 MST1P26927 711 aa11.14□□□□□ -0.63
TRAF3-208ENST00000560371 OR10S1Q8NGN2 331 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms