RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SCGB1D2O95969 90 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 MBPP02686 304 aaPredicted RBP7.13□□□□□ -1.27
LDLR-211ENST00000560173 CLEC3BP05452 202 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 CSN3P07498 182 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 RNASE2P10153 161 aaKnown RBP7.13□□□□□ -1.27
LDLR-211ENST00000560173 RPL12P30050 165 aaKnown RBP7.13□□□□□ -1.27
LDLR-211ENST00000560173 SNCAP37840 140 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 BSXQ3C1V8 233 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 CLLU1Q5K131 121 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 HAPLN4Q86UW8 402 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 GPHB5Q86YW7 130 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 OR1S1Q8NH92 325 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 MRAPQ8TCY5 172 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 MISP3Q96FF7 219 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 OR4C12Q96R67 309 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 RAB40CQ96S21 281 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 ATP6V0BQ99437 205 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 ZNF471Q9BX82 626 aaPredicted RBP7.13□□□□□ -1.27
LDLR-211ENST00000560173 SLC25A32Q9H2D1 315 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 ENY2Q9NPA8 101 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 C21orf62Q9NYP8 219 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 LSM5Q9Y4Y9 91 aaKnown RBP7.13□□□□□ -1.27
LDLR-211ENST00000560173 OR2T8A6NH00 312 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 H0YIZ8 118 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 LGALS9O00182 355 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 TGOLN2O43493 480 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 MT-CO2P00403 227 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 IGLV1-51P01701 117 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 FCGR2BP31994 310 aaPredicted RBP7.12□□□□□ -1.27
LDLR-211ENST00000560173 HTR2BP41595 481 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 TAS2R30P59541 319 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 ID3Q02535 119 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 TNFRSF9Q07011 255 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 BAXQ07812 192 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 ADAMTSL5Q6ZMM2 481 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 ST8SIA2Q92186 375 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 BSCL2Q96G97 398 aaPredicted RBP7.12□□□□□ -1.27
LDLR-211ENST00000560173 PRR25Q96S07 402 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 HEYLQ9NQ87 328 aaPredicted RBP7.12□□□□□ -1.27
LDLR-211ENST00000560173 SIGLEC8Q9NYZ4 499 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 OR5AC2Q9NZP5 309 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 PEMTQ9UBM1 199 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 HSPB7Q9UBY9 170 aa7.12□□□□□ -1.27
LDLR-211ENST00000560173 ZNF256Q9Y2P7 627 aaPredicted RBP7.12□□□□□ -1.27
LDLR-211ENST00000560173 LINC00862A6NCI5 91 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 C2orf70A6NJV1 201 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 CEBPZOSA8MTT3 80 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 A8MWP6 167 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 PITX3O75364 302 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 NXPH3O95157 252 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 ADMP35318 185 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 SUB1P53999 127 aaKnown RBP eCLIP7.11□□□□□ -1.27
LDLR-211ENST00000560173 ZNF266Q14584 549 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 FAM106AQ4KMX7 169 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 Q56UQ5 140 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 SPSB3Q6PJ21 355 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 UNQ9165/PRO28630Q6UXU0 137 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 BAP18Q8IXM2 172 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 UBAC2Q8NBM4 344 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 TMEM170AQ8WVE7 144 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 TMEM190Q8WZ59 177 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 PINX1Q96BK5 328 aaKnown RBP7.11□□□□□ -1.27
LDLR-211ENST00000560173 FAM210AQ96ND0 272 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 CIB3Q96Q77 187 aaPredicted RBP7.11□□□□□ -1.27
LDLR-211ENST00000560173 CHRDL1Q9BU40 450 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 MED9Q9NWA0 146 aa7.11□□□□□ -1.27
LDLR-211ENST00000560173 GAR1Q9NY12 217 aaKnown RBP7.11□□□□□ -1.27
LDLR-211ENST00000560173 IGHV3-35A0A0C4DH35 117 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 TMEM213A2RRL7 107 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 CORTO00230 105 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 IGHV3-48P01763 117 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 CTSGP08311 255 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 FOLR2P14207 255 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 EDN2P20800 178 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 MFAP4P55083 255 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 C2orf83Q53S99 150 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 STX12Q86Y82 276 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 SLC24A4Q8NFF2 622 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 DTD1Q8TEA8 209 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 ZNF414Q96IQ9 312 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 TXN2Q99757 166 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 RBKSQ9H477 322 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 FNDC4Q9H6D8 234 aaPredicted RBP7.1□□□□□ -1.27
LDLR-211ENST00000560173 LYRM2Q9NU23 88 aaPredicted RBP7.1□□□□□ -1.27
LDLR-211ENST00000560173 RCL1Q9Y2P8 373 aaKnown RBP7.1□□□□□ -1.27
LDLR-211ENST00000560173 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
LDLR-211ENST00000560173 STAB2Q8WWQ8 2551 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 ZNF320A2RRD8 509 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 NDUFA4O00483 81 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 SYNGR2O43760 224 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 SSSCA1O60232 199 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 DFFBO76075 338 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 GP9P14770 177 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 NPY1RP25929 384 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 NPBWR1P48145 328 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 CAV2P51636 162 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 ELLP55199 621 aaPredicted RBP7.09□□□□□ -1.27
LDLR-211ENST00000560173 HBG1P69891 147 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 HBG2P69892 147 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 RPP30P78346 268 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms