RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C22orf46C9J442 243 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 PMCHP20382 165 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 LOXP28300 417 aaPredicted RBP10.37□□□□□ -0.75
LDLR-207ENST00000558013 SRIP30626 198 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 COMPP49747 757 aaPredicted RBP10.37□□□□□ -0.75
LDLR-207ENST00000558013 KRTDAPP60985 99 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 ZNF705AQ6ZN79 300 aaPredicted RBP10.37□□□□□ -0.75
LDLR-207ENST00000558013 BEND2Q8NDZ0 799 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 ST6GALNAC6Q969X2 333 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 AMMECR1Q9Y4X0 333 aaPredicted RBP10.37□□□□□ -0.75
LDLR-207ENST00000558013 A0A1W2PRE2 83 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 BMPR1BO00238 502 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 SLAQ13239 276 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 C10orf113Q5VZT2 155 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 ZNF841Q6ZN19 808 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 PRSS33Q8NF86 280 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 GNB1LQ9BYB4 327 aa10.37□□□□□ -0.75
LDLR-207ENST00000558013 PTPRQQ9UMZ3 2332 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 MAP1AP78559 2803 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 KIR2DL5BA0A0G2JN68 375 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 KIR2DL5BA0A0G2JPC4 375 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 FSTL3O95633 263 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 KIR2DL5AQ8N109 375 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 TMEM167AQ8TBQ9 72 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 PAXXQ9BUH6 204 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 OSTCQ9NRP0 149 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 CACNA1BQ00975 2339 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 NDUFB3O43676 98 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 USF1P22415 310 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 GDF5OSQ5U4N7 250 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 Q71RC1 249 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 LINC00305Q7Z4B0 112 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 C11orf42Q8N5U0 333 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 SSBP4Q9BWG4 385 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 CHODLQ9H9P2 273 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 CDC42EP3Q9UKI2 254 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 PRRG2O14669 202 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 ZNF253O75346 499 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 CD24P25063 80 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 GPR6P46095 362 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 MEF2CQ06413 473 aaPredicted RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 IGF2-ASQ6U949 168 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 ZNF329Q86UD4 541 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 Q8NA96 180 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 CACNG8Q8WXS5 425 aa10.36□□□□□ -0.75
LDLR-207ENST00000558013 TBL2Q9Y4P3 447 aaKnown RBP10.36□□□□□ -0.75
LDLR-207ENST00000558013 VWC2LB2RUY7 222 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 GPX1P07203 203 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 G0S2P27469 103 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 OR1B1Q8NGR6 318 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 RNASE6Q93091 150 aaKnown RBP10.35□□□□□ -0.75
LDLR-207ENST00000558013 FXYD5Q96DB9 178 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 SMIM27A0A1W2PRY6 76 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 A0A1W2PS18 150 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 AMTP48728 403 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 TDGF1P3P51864 188 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 Q0VG73 95 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 LRRC10Q5BKY1 277 aa10.35□□□□□ -0.75
LDLR-207ENST00000558013 TRAV9-1A0A075B6T8 112 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 A0A1W2PN81 502 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 TCRBV4S1A1TA0A5B7 111 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 E7EQL1 145 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 TNFRSF13BO14836 293 aaPredicted RBP10.34□□□□□ -0.75
LDLR-207ENST00000558013 PAFAH1B2P68402 229 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 PNKDQ8N490 385 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 SIGLECL1Q8N7X8 197 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 WASHC3Q9Y3C0 194 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 ESDP10768 282 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 DLX6P56179 175 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 NUTF2P61970 127 aaKnown RBP10.34□□□□□ -0.75
LDLR-207ENST00000558013 GFRALQ6UXV0 394 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 NUDT10Q8NFP7 164 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 NUDT11Q96G61 164 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 CELSR1Q9NYQ6 3014 aa10.34□□□□□ -0.75
LDLR-207ENST00000558013 IGLC7A0M8Q6 106 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 A6NNC1 897 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 PEX7O00628 323 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TCAPO15273 167 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TOX4O94842 621 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 FAM87AP0C7U9 286 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 IGHV1-8P0DP01 117 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 LINC00322Q6ZN03 302 aaPredicted RBP10.33□□□□□ -0.76
LDLR-207ENST00000558013 Q8N976 141 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 C19orf24Q9BVV8 132 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 DYNLRB1Q9NP97 96 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 NRN1Q9NPD7 142 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 ARL2-SNX15V9GYD0 113 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 ZFHX3Q15911 3703 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 NTF3P20783 257 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 CAMPP49913 170 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TCF15Q12870 199 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TNXAQ16473 311 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TEX43Q6ZNM6 134 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 PDPNQ86YL7 162 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 ATOH7Q8N100 152 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 ASCL2Q99929 193 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 TNFRSF19Q9NS68 423 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 AKAP6Q13023 2319 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 FOSL1P15407 271 aa10.33□□□□□ -0.76
LDLR-207ENST00000558013 BRS3P32247 399 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms