RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 LYZL2Q7Z4W2 148 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 SELENOHQ8IZQ5 122 aaKnown RBP6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 OR10C1Q96KK4 312 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 CCDC140Q96MF4 163 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 RAB40CQ96S21 281 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 TP53RKQ96S44 253 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 OR2D2Q9H210 308 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 SDHAF2Q9NX18 166 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 PFDN2Q9UHV9 154 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 LSM5Q9Y4Y9 91 aaKnown RBP6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 S4R3C0 116 aa6.06□□□□□ -1.44
CCDC88C-214ENST00000557507 IGKV1D-13A0A0B4J2D9 117 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 RBFOX2O43251 390 aaKnown RBP eCLIP6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 TNFSF12O43508 249 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 GGCTO75223 188 aaKnown RBP6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 IGKV1-13P0DP09 117 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 RRASP10301 218 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 UBE2KP61086 200 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 IL15RAQ13261 267 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF266Q14584 549 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 Q6ZWC4 215 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 STX12Q86Y82 276 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 NECAP1Q8NC96 275 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 STOML3Q8TAV4 291 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 TCTEX1D2Q8WW35 142 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 ST8SIA2Q92186 375 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 RNF183Q96D59 192 aa6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 CIB3Q96Q77 187 aaPredicted RBP6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF430Q9H8G1 570 aaPredicted RBP6.05□□□□□ -1.44
CCDC88C-214ENST00000557507 DFFBO76075 338 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 S1PR2O95136 353 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 CRYZL1O95825 349 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 HPRT1P00492 218 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 SAA1P0DJI8 122 aaPredicted RBP6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 CTRB1P17538 263 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 ARL3P36405 182 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 APOC4P55056 127 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 TAS2R30P59541 319 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 HBG1P69891 147 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 HBG2P69892 147 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 RTL8BQ17RB0 113 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 VMA21Q3ZAQ7 101 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 CTRB2Q6GPI1 263 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 CLEC19AQ6UXS0 136 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 UNQ9165/PRO28630Q6UXU0 137 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 H2BFWTQ7Z2G1 175 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 GPHB5Q86YW7 130 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 BAP18Q8IXM2 172 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 SPAG16Q8N0X2 631 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 TTC9CQ8N5M4 171 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 TEX45Q8NA69 505 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 OR1L6Q8NGR2 347 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 OR4S2Q8NH73 311 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 RNF141Q8WVD5 230 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 RNF126Q9BV68 326 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 FBXL7Q9UJT9 491 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 PKD1P98161 4303 aa6.04□□□□□ -1.44
CCDC88C-214ENST00000557507 A0A1B0GVY2 172 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 A0A1B0GW64 132 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF320A2RRD8 509 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 LINC00862A6NCI5 91 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 RNF222A6NCQ9 220 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 LINC00473A8K010 186 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 TEX22C9J3V5 150 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 HRASP01112 189 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 MBPP02686 304 aaPredicted RBP6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 FCGR2BP31994 310 aaPredicted RBP6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 LPAR6P43657 344 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 RAB5CP51148 216 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 CAV2P51636 162 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 NANOS2P60321 138 aaKnown RBP6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 ODF3L2Q3SX64 289 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 NMSQ5H8A3 153 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 FAM209BQ5JX69 171 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 OR2C3Q8N628 320 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 TMEM217Q8N7C4 229 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 OR4D5Q8NGN0 318 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 FANCD2OSQ96PS1 177 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 LYRM2Q9NU23 88 aaPredicted RBP6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 MED9Q9NWA0 146 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 PRR13Q9NZ81 148 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 ZNF257Q9Y2Q1 563 aa6.03□□□□□ -1.44
CCDC88C-214ENST00000557507 TRAV25A0A0B4J276 109 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 KIR2DL5BA0A0G2JN68 375 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 KIR2DL5BA0A0G2JPC4 375 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 E7EUB6 86 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 TEX46H3BTG2 121 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 UBE2CO00762 179 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 SYNGR2O43760 224 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 SSSCA1O60232 199 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 IFNA5P01569 189 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 C8orf88P0DMB2 117 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 NQO2P16083 231 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 RPL35AP18077 110 aaKnown RBP6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 DUTP33316 252 aaKnown RBP6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 RAB2AP61019 212 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 BLOC1S1P78537 153 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 ID3Q02535 119 aa6.02□□□□□ -1.45
CCDC88C-214ENST00000557507 SLC25A24Q6NUK1 477 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms