RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 HOXB5P09067 269 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 IGLC1P0CG04 106 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 OR10J1P30954 320 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 BTCP35070 178 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 YPEL3P61236 119 aaPredicted RBP15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 DHRS2Q13268 280 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 Q8WTZ3 238 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 RNF2Q99496 336 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 VSIRQ9H7M9 311 aa15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 MRPL36Q9P0J6 103 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-210ENST00000555995 IGKV1-17P01599 117 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 GPX4P36969 197 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 GGNBP1Q5YKI7 109 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 TMEM170AQ8WVE7 144 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 GRAMD2BQ96HH9 432 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 SLC35E1Q96K37 410 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 WFDC10AQ9H1F0 79 aa15.43■□□□□ 0.06
CCDC88C-210ENST00000555995 SYNGR2O43760 224 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 MLANAQ16655 118 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 TIGITQ495A1 244 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 ACY3Q96HD9 319 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 GGTLC1Q9BX51 225 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 C20orf85Q9H1P6 137 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 FLVCR2Q9UPI3 526 aa15.42■□□□□ 0.06
CCDC88C-210ENST00000555995 LOC102724200A0A096LPH7 203 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 TRAV2A0A0B4J234 112 aa15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 FABP1P07148 127 aa15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 CRYBB3P26998 211 aa15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 EIF2B2P49770 351 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 NPIPB3Q92617 1050 aa15.41■□□□□ 0.06
CCDC88C-210ENST00000555995 STAB2Q8WWQ8 2551 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 IGHV3-49A0A0A0MS15 119 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 A6NHS1 94 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 WRBO00258 174 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 PLA2G10O15496 165 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 IAPPP10997 89 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 NUP62P37198 522 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 TCF24Q7RTU0 167 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 ST8SIA2Q92186 375 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 CITED4Q96RK1 184 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 WDR12Q9GZL7 423 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 PTTG2Q9NZH5 202 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 PFDN2Q9UHV9 154 aa15.4■□□□□ 0.06
CCDC88C-210ENST00000555995 RBMY1BA6NDE4 496 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 RBMY1EA6NEQ0 496 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 C3orf84H3BNL1 204 aa15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 TOMM40O96008 361 aa15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 RBMY1DP0C7P1 496 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 ANXA7P20073 488 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 APOC4P55056 127 aa15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 FAM90A2PQ658T7 463 aa15.39■□□□□ 0.05
CCDC88C-210ENST00000555995 IGHV3OR16-13A0A075B7E8 117 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 IGHV3-74A0A0B4J1X5 117 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 ADAP1O75689 374 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 TCRBP04435 133 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 HNRNPCP07910 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 NKX2-1P43699 371 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 ODF3L2Q3SX64 289 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 MZT2BQ6NZ67 158 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 MITD1Q8WV92 249 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 BATF3Q9NR55 127 aa15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 PAIP2BQ9ULR5 123 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-210ENST00000555995 HUWE1Q7Z6Z7 4374 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 ZFP92A6NM28 416 aa15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 DNASE2O00115 360 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 DFFBO76075 338 aa15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 IL4P05112 153 aa15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 RD3LP0DJH9 198 aa15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 RPL11P62913 178 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 UBQLN2Q9UHD9 624 aa15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 STRAPQ9Y3F4 350 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-210ENST00000555995 HELTA6NFD8 242 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 P2RY1P47900 373 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 AP2S1P53680 142 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 ID3Q02535 119 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 OR51G1Q8NGK1 321 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 MAGT1Q9H0U3 335 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 NUDT15Q9NV35 164 aa15.36■□□□□ 0.05
CCDC88C-210ENST00000555995 IGKV3-7A0A075B6H7 116 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 KIR2DL5BA0A0G2JN68 375 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 KIR2DL5BA0A0G2JPC4 375 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 FAM240BA0A1B0GVZ2 78 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 UBE2CO00762 179 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 APOHP02749 345 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 TFPI2P48307 235 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 GAMTQ14353 236 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 ZNF846Q147U1 533 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 KIR2DL5AQ8N109 375 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 OR4D5Q8NGN0 318 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 KIR2DL5BQ8NHK3 375 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 MUC7Q8TAX7 377 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 MS4A6AQ9H2W1 248 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 RABAC1Q9UI14 185 aa15.35■□□□□ 0.05
CCDC88C-210ENST00000555995 TENM3Q9P273 2699 aa15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 CFDP00746 253 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 ASAH1Q13510 395 aa15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 IAH1Q2TAA2 248 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 SPANXN5Q5MJ07 72 aa15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 OR8G2PQ6IF36 304 aa15.34■□□□□ 0.05
CCDC88C-210ENST00000555995 U3KQE9 123 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms