RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 NPIPB3Q92617 1050 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 DPF1Q92782 380 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 TAF15Q92804 592 aaKnown RBP eCLIP8.72□□□□□ -1.01
SHMT2-220ENST00000555634 NARS2Q96I59 477 aaKnown RBP8.72□□□□□ -1.01
SHMT2-220ENST00000555634 TRGV9Q99603 122 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 NPCDR1Q9BY65 106 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 WDR61Q9GZS3 305 aaKnown RBP8.72□□□□□ -1.01
SHMT2-220ENST00000555634 FNDC4Q9H6D8 234 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-220ENST00000555634 RNF24Q9Y225 148 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 WDR83OSQ9Y284 106 aa8.72□□□□□ -1.01
SHMT2-220ENST00000555634 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.71□□□□□ -1.02
SHMT2-220ENST00000555634 TGOLN2O43493 480 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 IGHV3-11P01762 117 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 IGHV3-48P01763 117 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 IGHV3-23P01764 117 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 ZP3P21754 424 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 CDX1P47902 265 aaPredicted RBP8.71□□□□□ -1.02
SHMT2-220ENST00000555634 ZNF616Q08AN1 781 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 ARL16Q0P5N6 197 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 RPEL1Q2QD12 228 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 RPL7L1Q6DKI1 246 aaKnown RBP8.71□□□□□ -1.02
SHMT2-220ENST00000555634 CLEC19AQ6UXS0 136 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 Q6ZRG5 221 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 BAP18Q8IXM2 172 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 THAP8Q8NA92 274 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 HSD17B11Q8NBQ5 300 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 STOML3Q8TAV4 291 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 Q8WTZ3 238 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 PFDN5Q99471 154 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 PEF1Q9UBV8 284 aaKnown RBP8.71□□□□□ -1.02
SHMT2-220ENST00000555634 TIMM9Q9Y5J7 89 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 DMRT1Q9Y5R6 373 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 S4R3C0 116 aa8.71□□□□□ -1.02
SHMT2-220ENST00000555634 NIPBLQ6KC79 2804 aaeCLIP8.7□□□□□ -1.02
SHMT2-220ENST00000555634 BMPR1BO00238 502 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 AGPAT2O15120 278 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 GGCTO75223 188 aaKnown RBP8.7□□□□□ -1.02
SHMT2-220ENST00000555634 TSPAN15O95858 294 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 MBP02144 154 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 BMI1P35226 326 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 AWAT1Q58HT5 328 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 AKR1C8PQ5T2L2 129 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 PXDC1Q5TGL8 231 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 ZNF343Q6P1L6 599 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 ZNF600Q6ZNG1 722 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 CYP2G1PQ6ZSU1 146 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 NDUFA11Q86Y39 141 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 ZNF491Q8N8L2 437 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 MYOZ3Q8TDC0 251 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 PHYHIPLQ96FC7 376 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 CCDC140Q96MF4 163 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 GINS3Q9BRX5 216 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 PSMG3Q9BT73 122 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-220ENST00000555634 C19orf24Q9BVV8 132 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 KLK15Q9H2R5 256 aa8.7□□□□□ -1.02
SHMT2-220ENST00000555634 ANKRD34BA5PLL1 514 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 COX7A2P2O60397 106 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 YIF1AO95070 293 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 TOMM40O96008 361 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 IFNA7P01567 189 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 CLEC3BP05452 202 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 LINC00869P0C866 280 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 IGLC1P0CG04 106 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 RD3LP0DJH9 198 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 YPEL3P61236 119 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-220ENST00000555634 B2MP61769 119 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 SERF2P84101 59 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 ACOT6Q3I5F7 207 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-220ENST00000555634 FAM106AQ4KMX7 169 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 C10orf99Q6UWK7 81 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 C12orf54Q6X4T0 127 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 LCNL1Q6ZST4 164 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 C3orf56Q8N813 242 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 OR51G1Q8NGK1 321 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 OR1L4Q8NGR5 311 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 ST8SIA2Q92186 375 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 OR5B12Q96R08 314 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 GGTLC1Q9BX51 225 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 PXMP4Q9Y6I8 212 aa8.69□□□□□ -1.02
SHMT2-220ENST00000555634 A0A1W2PRX2 142 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 UMAD1C9J7I0 102 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 HSPB1P04792 205 aaKnown RBP8.68□□□□□ -1.02
SHMT2-220ENST00000555634 SEC11BP0C7V7 166 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 CD28P10747 220 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 ATP6V0CP27449 155 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 RPL29P47914 159 aaKnown RBP8.68□□□□□ -1.02
SHMT2-220ENST00000555634 ELLP55199 621 aaPredicted RBP8.68□□□□□ -1.02
SHMT2-220ENST00000555634 LYZP61626 148 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 RUNX1Q01196 453 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 KRTAP24-1Q3LI83 254 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 TIGITQ495A1 244 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 FFAR4Q5NUL3 377 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 STPG3Q8N7X2 389 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 C11orf44Q8N8P7 122 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 OR2G3Q8NGZ4 309 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 RNF2Q99496 336 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 MGST2Q99735 147 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 SLC25A32Q9H2D1 315 aa8.68□□□□□ -1.02
SHMT2-220ENST00000555634 LSM4Q9Y4Z0 139 aaKnown RBP8.68□□□□□ -1.02
SHMT2-220ENST00000555634 ELOA3CA0A087WX78 387 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms