RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CTSZQ9UBR2 303 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 CDC42EP3Q9UKI2 254 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ARL2-SNX15V9GYD0 113 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 ABCA4P78363 2273 aa6.05□□□□□ -1.44
LIMA1-213ENST00000552720 A0A0G2JNJ9 132 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 SMIM27A0A1W2PRY6 76 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 A0A1W2PS18 150 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 NKX6-3A6NJ46 265 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 PRSS47A8MTI9 375 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 C17orf100A8MU93 164 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 H3BTX0 84 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 CORTO00230 105 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 ISLRO14498 428 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 COX7A2P2O60397 106 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF253O75346 499 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 IGLV2-23P01705 113 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 AMTP48728 403 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 BSPH1Q075Z2 132 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM177Q53S58 311 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 GDF5OSQ5U4N7 250 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 HCP5Q6MZN7 132 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF841Q6ZN19 808 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 SIGLECL1Q8N7X8 197 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 OR10X1Q8NGY0 326 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 GAL3ST2Q9H3Q3 398 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 SAP30LQ9HAJ7 183 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 NRN1Q9NPD7 142 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 Q9UFV3 132 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 AMMECR1Q9Y4X0 333 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-213ENST00000552720 A0A1W2PPI3 338 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 FSTL3O95633 263 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 THBDP07204 575 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 PRB4P10163 310 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-213ENST00000552720 CNTFRP26992 372 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 CASP6P55212 293 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 MRGPRG-AS1Q2M3A8 158 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 C3orf36Q3SXR2 165 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 C10orf113Q5VZT2 155 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 IGFL3Q6UXB1 125 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF329Q86UD4 541 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 BLNKQ8WV28 456 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 FXYD5Q96DB9 178 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 PAXXQ9BUH6 204 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 VAMP8Q9BV40 100 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 RPH3ALQ9UNE2 315 aa6.04□□□□□ -1.44
LIMA1-213ENST00000552720 NBASA2RRP1 2371 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PPIAL4EA0A075B759 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TRBV9A0A0B4J1U6 114 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 VWC2LB2RUY7 222 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 C22orf46C9J442 243 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PPIAL4DF5H284 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 AMY1AP04745 511 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PPIAL4FP0DN26 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TNFRSF1AP19438 455 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 ORM2P19652 201 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 USF1P22415 310 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 BRS3P32247 399 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 GPR6P46095 362 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 BATFQ16520 125 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM108Q6UXF1 575 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 LINC00305Q7Z4B0 112 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PNKDQ8N490 385 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NUP37Q8NFH4 326 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 OR4C13Q8NGP0 309 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM167AQ8TBQ9 72 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 FAM57AQ8TBR7 257 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 C20orf144Q9BQM9 153 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 SSBP4Q9BWG4 385 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 MRPL32Q9BYC8 188 aaKnown RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 WNT10AQ9GZT5 417 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 GSX1Q9H4S2 264 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PPIAL4AQ9Y536 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 A0A1W2PN81 502 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TCRBV4S1A1TA0A5B7 111 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 DIRC3C9JPN6 131 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM178BH3BS89 294 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 PEX7O00628 323 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 KLK10O43240 276 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 ENSAO43768 121 aaKnown RBP6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NTF3P20783 257 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 MFAP2P55001 183 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 BPIFB3P59826 476 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF124Q15973 351 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM183BQ1AE95 376 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM95Q3KNT9 176 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 LEMD1Q68G75 181 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 CYB5R2Q6BCY4 276 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 WDR73Q6P4I2 378 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NIT1Q86X76 327 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 ATOH7Q8N100 152 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NUP35Q8NFH5 326 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NUDT10Q8NFP7 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 CACNG8Q8WXS5 425 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 ST6GALNAC6Q969X2 333 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 NUDT11Q96G61 164 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 KCNS1Q96KK3 526 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 MIEN1Q9BRT3 115 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 C19orf24Q9BVV8 132 aa6.03□□□□□ -1.44
LIMA1-213ENST00000552720 IZUMO1RA6ND01 250 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 APCSP02743 223 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms