RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 BSCL2Q96G97 398 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 EAF1Q96JC9 268 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 CITED4Q96RK1 184 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 RASL11BQ9BPW5 248 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 PBDC1Q9BVG4 233 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 PITPNC1Q9UKF7 332 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 DNAH1Q9P2D7 4330 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 HERC2O95714 4834 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 A0A1W2PRX2 142 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 CA2P00918 260 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 CRYGBP07316 175 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 OR13C7P0DN81 318 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 ARL16Q0P5N6 197 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 EBI3Q14213 229 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 HNF4GQ14541 408 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 C5orf64Q2M2E5 130 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 VWC2Q2TAL6 325 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 PXDC1Q5TGL8 231 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 TEPPQ6URK8 271 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 BTNL8Q6UX41 500 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 Q6ZRG5 221 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 OR4F17Q8NGA8 305 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 FAM213BQ8TBF2 198 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 C20orf173Q96LM9 149 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 OR4F4Q96R69 305 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 FBXL15Q9H469 300 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 THYN1Q9P016 225 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 RYR1P21817 5038 aa5.6□□□□□ -1.51
DEPDC4-208ENST00000549341 TET2Q6N021 2002 aaPredicted RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 PMS2P5A8MQ11 134 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 KRBOX1C9JBD0 128 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 I3L521 148 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 M0QZK8 103 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 MT-CO2P00403 227 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 IFNA1P01562 189 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 FABP1P07148 127 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 RNASE2P10153 161 aaKnown RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 DEFA4P12838 97 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 HOXD3P31249 432 aaPredicted RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 TAGLN2P37802 199 aaKnown RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 OPRK1P41145 380 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 FXYD3Q14802 87 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 PEA15Q15121 130 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 LY6EQ16553 131 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 AANATQ16613 207 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM41BQ5BJD5 291 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 ZNF562Q6V9R5 426 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 C16orf82Q7Z2V1 217 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM144Q7Z5S9 345 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 CENPVQ7Z7K6 275 aaPredicted RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 EIF4E3Q8N5X7 224 aaKnown RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 ZNF114Q8NC26 417 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 OR1P1Q8NH06 330 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 OR2T6Q8NHC8 308 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 SRSF12Q8WXF0 261 aaKnown RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 RBMXL1Q96E39 390 aaKnown RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM68Q96MH6 324 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 FAM210AQ96ND0 272 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 B9D2Q9BPU9 175 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 ACTR3CQ9C0K3 210 aaPredicted RBP5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 MEGF9Q9H1U4 602 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 HRH4Q9H3N8 390 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 SLC39A9Q9NUM3 307 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 WDR83OSQ9Y284 106 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 U3KQK5 164 aa5.59□□□□□ -1.51
DEPDC4-208ENST00000549341 A0A1W2PPV4 95 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 C3orf84H3BNL1 204 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 PF4V1P10720 104 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 CD28P10747 220 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 HIST1H1BP16401 226 aaKnown RBP5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 PPT1P50897 306 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 LINC00310P59036 64 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 KRTAP10-11P60412 298 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 PJVKQ0ZLH3 352 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 BSXQ3C1V8 233 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 FFAR4Q5NUL3 377 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 SLC16A13Q7RTY0 426 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 S100A7AQ86SG5 101 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 HAPLN4Q86UW8 402 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 PCNPQ8WW12 178 aaKnown RBP5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 ARPC1AQ92747 370 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 CXorf58Q96LI9 332 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 RNF2Q99496 336 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 RSG1Q9BU20 258 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 NPCDR1Q9BY65 106 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 SH3BGRL3Q9H299 93 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 SMDT1Q9H4I9 107 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 MOB4Q9Y3A3 225 aa5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 F11RQ9Y624 299 aaKnown RBP5.58□□□□□ -1.52
DEPDC4-208ENST00000549341 MFSD2BA6NFX1 497 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 H3BUX3 64 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 HLA-DRB1P01911 266 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 MYOD1P15172 320 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 M6PRP20645 277 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 CNTFRP26992 372 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 S100A7P31151 101 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 RPL29P47914 159 aaKnown RBP5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 ELLP55199 621 aaPredicted RBP5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 SELENOTP62341 195 aa5.57□□□□□ -1.52
DEPDC4-208ENST00000549341 RUNX1Q01196 453 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms