RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LPCAT3Q6P1A2 487 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 TEX261Q6UWH6 196 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 H2BFWTQ7Z2G1 175 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 GBGT1Q8N5D6 347 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 OR4A16Q8NH70 328 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 MRGPRFQ96AM1 343 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 SDHCQ99643 169 aaPredicted RBP6.22□□□□□ -1.41
USP28-215ENST00000545608 TXN2Q99757 166 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 MARVELD1Q9BSK0 173 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 CSTL1Q9H114 145 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 FAM212BQ9NTI7 297 aaPredicted RBP6.22□□□□□ -1.41
USP28-215ENST00000545608 COMMD3Q9UBI1 195 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 ALG5Q9Y673 324 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 U3KQ87 197 aa6.22□□□□□ -1.41
USP28-215ENST00000545608 MPTX1A8MV57 137 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 INMT-MINDY4F8WBC2 141 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 LYRM1O43325 122 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 TSC22D2O75157 780 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 APOHP02749 345 aaPredicted RBP6.21□□□□□ -1.42
USP28-215ENST00000545608 ELK1P19419 428 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 S100GP29377 79 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 CMC4P56277 68 aaPredicted RBP6.21□□□□□ -1.42
USP28-215ENST00000545608 TOMM20LQ6UXN7 152 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 TCF24Q7RTU0 167 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 COMMD7Q86VX2 200 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 ZNF114Q8NC26 417 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 PHLDA1Q8WV24 401 aaPredicted RBP6.21□□□□□ -1.42
USP28-215ENST00000545608 PINX1Q96BK5 328 aaKnown RBP6.21□□□□□ -1.42
USP28-215ENST00000545608 SCPEP1Q9HB40 452 aa6.21□□□□□ -1.42
USP28-215ENST00000545608 KLK5Q9Y337 293 aaPredicted RBP6.21□□□□□ -1.42
USP28-215ENST00000545608 IGHV3-66A0A0C4DH42 116 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 LINC00854A0A1B0GVQ3 168 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 M0QYG6 137 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 GNG7O60262 68 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 HPGDSO60760 199 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 IGKV1-5P01602 117 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 PI3P19957 117 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 ERHP84090 104 aaKnown RBP6.2□□□□□ -1.42
USP28-215ENST00000545608 BAK1Q16611 211 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 RNASE12Q5GAN4 147 aaKnown RBP6.2□□□□□ -1.42
USP28-215ENST00000545608 C9orf62Q8N4C0 152 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 RPP25LQ8N5L8 163 aaKnown RBP6.2□□□□□ -1.42
USP28-215ENST00000545608 TMEM217Q8N7C4 229 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 ZNF680Q8NEM1 530 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 ST8SIA2Q92186 375 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 RAB24Q969Q5 203 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 CMTM3Q96MX0 182 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 RARRES2Q99969 163 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 C7orf50Q9BRJ6 194 aaKnown RBP6.2□□□□□ -1.42
USP28-215ENST00000545608 VSIRQ9H7M9 311 aa6.2□□□□□ -1.42
USP28-215ENST00000545608 A0A0B4J293 547 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 A0A1B0GU03 582 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 FAM25EA8MYX2 175 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 ST8SIA3O43173 380 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 DEDDO75618 318 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 DFFBO76075 338 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 TMEM50AO95807 157 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 P0C879 139 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 GYPEP15421 78 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MALP21145 153 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 NPBWR1P48145 328 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 DEFB131AP59861 70 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 NANOS2P60321 138 aaKnown RBP6.19□□□□□ -1.42
USP28-215ENST00000545608 RND3P61587 244 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 PAFAH1B2P68402 229 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 IL18Q14116 193 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 ZNF79Q15937 498 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MLANAQ16655 118 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 LEMD1Q68G75 181 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 PVRIGQ6DKI7 326 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 FAM24BQ8N5W8 94 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.19□□□□□ -1.42
USP28-215ENST00000545608 OR11H2Q8NH07 326 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 GATAD1Q8WUU5 269 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 RBPMSQ93062 196 aaKnown RBP6.19□□□□□ -1.42
USP28-215ENST00000545608 TP53RKQ96S44 253 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MS4A6AQ9H2W1 248 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MED9Q9NWA0 146 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MCUBQ9NWR8 336 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 MRPL36Q9P0J6 103 aaKnown RBP6.19□□□□□ -1.42
USP28-215ENST00000545608 KLK11Q9UBX7 282 aa6.19□□□□□ -1.42
USP28-215ENST00000545608 PUS1Q9Y606 427 aaKnown RBP eCLIP6.19□□□□□ -1.42
USP28-215ENST00000545608 A0A0G2JRQ6 117 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 INS-IGF2F8WCM5 200 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 DNASE2O00115 360 aaPredicted RBP6.18□□□□□ -1.42
USP28-215ENST00000545608 DEFB4AO15263 64 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 CA1P00915 261 aaPredicted RBP6.18□□□□□ -1.42
USP28-215ENST00000545608 RNASE2P10153 161 aaKnown RBP6.18□□□□□ -1.42
USP28-215ENST00000545608 PGAM2P15259 253 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 NUP62P37198 522 aaPredicted RBP6.18□□□□□ -1.42
USP28-215ENST00000545608 PIGPP57054 158 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 SP6Q3SY56 376 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 Q5BKY6 102 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 LGALS9CQ6DKI2 356 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 ZNF600Q6ZNG1 722 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 LHFPL1Q86WI0 220 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 OR52I2Q8NH67 350 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 C11orf45Q8TAV5 145 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 GINS3Q9BRX5 216 aa6.18□□□□□ -1.42
USP28-215ENST00000545608 FNDC4Q9H6D8 234 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms