RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TMEM141Q96I45 108 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 SPCS1Q9Y6A9 102 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 IGFBP2P18065 325 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 RPRMLQ8N4K4 120 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 CYSLTR1Q9Y271 337 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 INTS1Q8N201 2190 aaKnown RBP6.48□□□□□ -1.37
VPS13D-211ENST00000543710 SLC25A20O43772 301 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 ATXN8Q156A1 80 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 WDR82Q6UXN9 313 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 DMRTC2Q8IXT2 367 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-211ENST00000543710 LYZL4Q96KX0 146 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 FBXL7Q9UJT9 491 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 C17orf100A8MU93 164 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 TFPI2P48307 235 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 FBLN7Q53RD9 439 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 NPIPB3Q92617 1050 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 USMG5Q96IX5 58 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 COX11Q9Y6N1 276 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 ACACAQ13085 2346 aa6.48□□□□□ -1.37
VPS13D-211ENST00000543710 ITLN2Q8WWU7 325 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM50AO95807 157 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 IGHV1-2P23083 117 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 NMSQ5H8A3 153 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C10orf91Q5T1B1 145 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 RNF182Q8N6D2 247 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 LINC00477Q96M19 166 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 DERL1Q9BUN8 251 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 CYTL1Q9NRR1 136 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 THSD7BQ9C0I4 1608 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 SAA2-SAA4A0A096LPE2 208 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 CGAP01215 116 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 SAA2P0DJI9 122 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 Q0VG73 95 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C17orf82Q86X59 251 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 HIST3H2BBQ8N257 126 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C8orf31Q8N9H6 132 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 IGHV3-13P01766 116 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 ZNF672Q499Z4 452 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM167AQ8TBQ9 72 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 MGST2Q99735 147 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 PLSCR4Q9NRQ2 329 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 K7EMI3 77 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 F12P00748 615 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 TAL2Q16559 108 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C9orf139Q6ZV77 190 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 NEGR1Q7Z3B1 354 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 Q8TCH9 128 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 FOXC2Q99958 501 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 ETV2O00321 342 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 SAA1P0DJI8 122 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C9orf66Q5T8R8 295 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 C11orf44Q8N8P7 122 aa6.47□□□□□ -1.37
VPS13D-211ENST00000543710 IGKV3-7A0A075B6H7 116 aa6.46□□□□□ -1.37
VPS13D-211ENST00000543710 C17orf98A8MV24 154 aa6.46□□□□□ -1.37
VPS13D-211ENST00000543710 CTAG1AP78358 180 aa6.46□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM14EPQ6UXP3 125 aa6.46□□□□□ -1.37
VPS13D-211ENST00000543710 SIGMAR1Q99720 223 aa6.46□□□□□ -1.37
VPS13D-211ENST00000543710 CROCCQ5TZA2 2017 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 RAMP1O60894 148 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 CRPP02741 224 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 CLPSP04118 112 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 CECR9P0C854 216 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM249Q2WGJ8 235 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 MIR17HGQ75NE6 70 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 CHAC1Q9BUX1 264 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 MRPL20Q9BYC9 149 aaKnown RBP6.46□□□□□ -1.38
VPS13D-211ENST00000543710 PLXNA2O75051 1894 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF318Q5VUA4 2279 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 MEX3AA1L020 520 aaKnown RBP6.46□□□□□ -1.38
VPS13D-211ENST00000543710 QRFPP83859 136 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 KIR3DL3Q8N743 410 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 OR11H6Q8NGC7 330 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 MTCL1Q9Y4B5 1905 aaKnown RBP6.46□□□□□ -1.38
VPS13D-211ENST00000543710 SIVA1O15304 175 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 OR9G9P0C7N8 305 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 VKORC1L1Q8N0U8 176 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 RASL10AQ92737 203 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 RNF125Q96EQ8 232 aa6.46□□□□□ -1.38
VPS13D-211ENST00000543710 CELA2AP08217 269 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 MBNL3Q9NUK0 354 aaKnown RBP6.45□□□□□ -1.38
VPS13D-211ENST00000543710 PSG8Q9UQ74 426 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 SBF1O95248 1867 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 HCP5Q6MZN7 132 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 PRSS57Q6UWY2 283 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 C9orf106Q8NAJ2 232 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 TTC3P53804 2025 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 FOXI3A8MTJ6 420 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-211ENST00000543710 CBLN1P23435 193 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 REG1BP48304 166 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 C15orf53Q8NAA6 179 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 PHLDA1Q8WV24 401 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-211ENST00000543710 NABP1Q96AH0 204 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 WFDC6Q9BQY6 131 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 WNT10AQ9GZT5 417 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM14CQ9P0S9 112 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 TMEM155Q4W5P6 130 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 RPL39P5Q59GN2 51 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 FAM90A2PQ658T7 463 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 SIGLEC15Q6ZMC9 328 aa6.45□□□□□ -1.38
VPS13D-211ENST00000543710 TMSB15BA0A087X1C1 80 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms