RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 A0A1W2PPR1 153 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 OR10J1P30954 320 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 RPS20P60866 119 aaKnown RBP7.81□□□□□ -1.16
CLIP1-212ENST00000540304 RHOGP84095 191 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 PRCDQ00LT1 54 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 DIAPH2-AS1Q14236 149 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 PRSS8Q16651 343 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 OR4P4Q8NGL7 312 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 MBD3L1Q8WWY6 194 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 PRSS46E5RG02 174 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 C17orf112F2Z3M2 114 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 MT-CO2P00403 227 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 ARL3P36405 182 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF726P1Q15940 193 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF709Q8N972 641 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 OR5B3Q8NH48 314 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 TMEM170AQ8WVE7 144 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 CLEC7AQ9BXN2 247 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 PLEKHA3Q9HB20 300 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 WDR83OSQ9Y284 106 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 C19orf84I3L1E1 186 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 IGLV1-47P01700 117 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 DEFA4P12838 97 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 NPY1RP25929 384 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 HLA-DRB5Q30154 266 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF787Q6DD87 383 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 ACSM6Q6P461 480 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 LY6G5BQ8NDX9 201 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 OR4A5Q8NH83 315 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 VSTM2AQ8TAG5 236 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 RARRES2Q99969 163 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 GTSF1LQ9H1H1 148 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 SLC35B3Q9H1N7 401 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 UBTD1Q9HAC8 227 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 VAX2Q9UIW0 290 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 ZFHX3Q15911 3703 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 G3V4G9 280 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 SMAD7O15105 426 aaKnown RBP7.8□□□□□ -1.16
CLIP1-212ENST00000540304 MPDU1O75352 247 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 GATA3P23771 443 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 TM4SF20Q53R12 229 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 CCDC144NLQ6NUI1 221 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 CLDND2Q8NHS1 167 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 PATZ1Q9HBE1 687 aaKnown RBP7.8□□□□□ -1.16
CLIP1-212ENST00000540304 WNK2Q9Y3S1 2297 aa7.8□□□□□ -1.16
CLIP1-212ENST00000540304 CRYBG3Q68DQ2 2970 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 TEX50A0A1B0GTY4 177 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 TSPAN13O95857 204 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 IGFBP2P18065 325 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 USF1P22415 310 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF506Q5JVG8 444 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 FFAR4Q5NUL3 377 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 LCN15Q6UWW0 184 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 NIT1Q86X76 327 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 OR8I2Q8N0Y5 310 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 TMEM18Q96B42 140 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 LAMTOR2Q9Y2Q5 125 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 MAP1LC3B2A6NCE7 125 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 SNAI2O43623 268 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 CA2P00918 260 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 IGKV1D-33P01593 117 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 IGKV1-33P01594 117 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 CDKN1AP38936 164 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 RPL8P62917 257 aaKnown RBP7.79□□□□□ -1.16
CLIP1-212ENST00000540304 RPP25LQ8N5L8 163 aaKnown RBP7.79□□□□□ -1.16
CLIP1-212ENST00000540304 TMEM167AQ8TBQ9 72 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 SSBP3Q9BWW4 388 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-212ENST00000540304 COMMD5Q9GZQ3 224 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 MAP1LC3BQ9GZQ8 125 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 ONECUT1Q9UBC0 465 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 AMMECR1Q9Y4X0 333 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-212ENST00000540304 CELSR1Q9NYQ6 3014 aa7.79□□□□□ -1.16
CLIP1-212ENST00000540304 GAGE12BA1L429 117 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 BUB1B-PAK6H3BSN5 160 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 HMGB3O15347 200 aaKnown RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 IGLV2-23P01705 113 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 HSPB1P04792 205 aaKnown RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR10J4P0C629 311 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 COX7A1P24310 79 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 ATP5IP56385 69 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 ICAM4Q14773 271 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 VMA21Q3ZAQ7 101 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 TREML4Q6UXN2 200 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 TOMM20LQ6UXN7 152 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 Q8N7P7 452 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR10G4Q8NGN3 311 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR10G9Q8NGN4 311 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR10G7Q8NGN6 311 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR4X1Q8NH49 305 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 EAF1Q96JC9 268 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 SLC39A9Q9NUM3 307 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 CSMD2Q7Z408 3487 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 CTXND1A0A1B0GTU2 59 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 LOC102723971A0A1B0GUV8 181 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 A0A1W2PPV4 95 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 GPR6P46095 362 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 HINT1P49773 126 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-212ENST00000540304 OR1L8Q8NGR8 309 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 GNG13Q9P2W3 67 aa7.78□□□□□ -1.16
CLIP1-212ENST00000540304 FNDC10F2Z333 226 aa7.77□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms