RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-222	ENST00000540183	FAM25G	B3EWG6	89 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	UCP1	P25874	307 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	PRSS54	Q6PEW0	395 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	LINC00336	Q6ZUF6	198 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	RNASE11	Q8TAA1	199 aa	Known RBP	10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	MARCH1	Q8TCQ1	289 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	NARS2	Q96I59	477 aa	Known RBP	10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	FUNDC2	Q9BWH2	189 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	COPZ2	Q9P299	210 aa		10.22	□□□□□ -0.77
SEMA4D-222	ENST00000540183	FAM90A26	D6RGX4	464 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	NXPH3	O95157	252 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	AMBP	P02760	352 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	HNRNPC	P07910	306 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	FXYD7	P58549	80 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	DHODH	Q02127	395 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	SCGB2B2	Q4G0G5	96 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	GDF5OS	Q5U4N7	250 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	POM121L12	Q8N7R1	296 aa		10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	RRNAD1	Q96FB5	475 aa	Known RBP	10.21	□□□□□ -0.77
SEMA4D-222	ENST00000540183	PRSS29P	A6NIE9	313 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183		H3BMM0	161 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ATG12	O94817	140 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	OR5AC1	P0C628	307 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	OR10J1	P30954	320 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SPCS3	P61009	180 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	MEF2D	Q14814	521 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	FAAP20	Q6NZ36	180 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CENPS	Q8N2Z9	138 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ARRDC1	Q8N5I2	433 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	OR1S2	Q8NGQ3	325 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	HEYL	Q9NQ87	328 aa	Predicted RBP	10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	HSPG2	P98160	4391 aa		10.2	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TRAV30	A0A087WSZ9	112 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183		A0A087WXM4	84 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	IGKV3-20	P01619	116 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	IL4	P05112	153 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	HTR2B	P41595	481 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	EMP1	P54849	157 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	AARD	Q4LEZ3	155 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SELENOH	Q8IZQ5	122 aa	Known RBP	10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CCDC71L	Q8N9Z2	235 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TERB2	Q8NHR7	220 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183		Q8WTZ3	238 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	GLYATL2	Q8WU03	294 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	GPR146	Q96CH1	333 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ABHD1	Q96SE0	405 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	NDUFAF3	Q9BU61	184 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	NAA50	Q9GZZ1	169 aa	Known RBP	10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	PLA2G2E	Q9NZK7	142 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	EXTL2	Q9UBQ6	330 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	MTFP1	Q9UDX5	166 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CACNG5	Q9UF02	275 aa		10.19	□□□□□ -0.78
SEMA4D-222	ENST00000540183	IGLV2-18	A0A075B6J9	118 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	RPS10-NUDT3	A0A1W2PQS6	291 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SCGB2A1	O75556	95 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	YPEL3	P61236	119 aa	Predicted RBP	10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	C2orf83	Q53S99	150 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SIGLEC15	Q6ZMC9	328 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ZFAND1	Q8TCF1	268 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	NPIPB3	Q92617	1050 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ACY3	Q96HD9	319 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	RTBDN	Q9BSG5	229 aa	Predicted RBP	10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TMEM222	Q9H0R3	208 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	VCX3A	Q9NNX9	186 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	NRN1	Q9NPD7	142 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	PRR13	Q9NZ81	148 aa		10.18	□□□□□ -0.78
SEMA4D-222	ENST00000540183	IGHV3OR16-12	A0A075B7B8	117 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CEBPZOS	A8MTT3	80 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	BUB3	O43684	328 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CDS2	O95674	445 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	RAB3D	O95716	219 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	CD74	P04233	296 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183		P0DMU3	169 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	FAM231A	P0DMU4	169 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	FAM231C	P0DMU5	169 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	HLA-DRB4	P13762	266 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	EIF2B2	P49770	351 aa	Known RBP	10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	RORC	P51449	518 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SNRPD3	P62318	126 aa	Known RBP	10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TMEM229B	Q8NBD8	167 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SLC24A4	Q8NFF2	622 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	OR51G1	Q8NGK1	321 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	OR52E5	Q8NH55	327 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	HLA-DRB4	X5D2U9	266 aa		10.17	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TOMM40	O96008	361 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	PSG1	P11464	419 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	SLC25A4	P12235	298 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	AP2S1	P53680	142 aa	Predicted RBP	10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	TMEM268	Q5VZI3	342 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	STEAP1B	Q6NZ63	245 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ZNF705A	Q6ZN79	300 aa	Predicted RBP	10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	RNASEH2C	Q8TDP1	164 aa	Known RBP	10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	C1QTNF4	Q9BXJ3	329 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	WDR12	Q9GZL7	423 aa	Known RBP	10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	NAA60	Q9H7X0	242 aa		10.16	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ZNF705F	A8MVS1	300 aa	Predicted RBP	10.15	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ZNF705D	P0CH99	300 aa	Predicted RBP	10.15	□□□□□ -0.78
SEMA4D-222	ENST00000540183	ZNF705B	P0CI00	300 aa	Predicted RBP	10.15	□□□□□ -0.78

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